View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_high_11 (Length: 460)
Name: NF17597_high_11
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 41824462 - 41824899
Alignment:
| Q |
14 |
atcagatatagattgtgccccagcaataaaagtttgtgcttttccctgcagttaagttacaccataaaattcagagaaagcaaatcatatgatgcattgt |
113 |
Q |
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| T |
41824462 |
atcagatatagattgtgccccagcaataaaagtttgtgcttttccctgcagttaagttacaccataaaattcagagaaagcaaatcatatgatgctttgt |
41824561 |
T |
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| Q |
114 |
tgatttggtgagggataatgctctttgtggctagcttcactacttgcttgtatagattttggatgagtaaataaataggtaaaaaaggacaacaaacctg |
213 |
Q |
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| T |
41824562 |
tgatttggtgagggataatgctctttgtggctagcttcactacttgcttgtatagattttggatgagtaaataaataggtaaaaaaggacaacaaacctg |
41824661 |
T |
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| Q |
214 |
attggttgagcttgatgctcttgaaataatagcatatgtctacatgataagaaattaattgcagtatcaggaggagataggaccattgattgcaactata |
313 |
Q |
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| T |
41824662 |
attggttgagcttgatgctcttgaaataatagcatatgtctacatgataagaaattaattgcaatatc---aggagacaggaccattgattgcaactata |
41824758 |
T |
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| Q |
314 |
gaagtggataacagttttagaatttaatttgtatacactgtcggcataaaatgtttttacacatgcatcaaattatatctcacaatgtagatattttaga |
413 |
Q |
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| T |
41824759 |
gaagtggataacagttttagaatttaatttgtatacactgtcggcgtaaaatgtttttacacatgcatcaaattatatctcacaatgtagatattttaga |
41824858 |
T |
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| Q |
414 |
atataatttaacaaagtagcatcgtggtcgattttcttgga |
454 |
Q |
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| T |
41824859 |
atataatttaacaaagtagcatcgtggttgattttattgga |
41824899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 41818297 - 41818369
Alignment:
| Q |
196 |
aaaaggacaacaaacctgattggttgagcttgatgctcttgaaataatagcatatgtctacatgataagaaat |
268 |
Q |
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| T |
41818297 |
aaaaggaaaacaaacctgattggttgagcttgatgcttttgaaataataccatatgtctacatgacaagaaat |
41818369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 18388168 - 18388102
Alignment:
| Q |
194 |
aaaaaaggacaacaaacctgattggttgagcttgatgctcttgaaataatagcatatgtctacatga |
260 |
Q |
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| T |
18388168 |
aaaaaaggaaaacaaacctgattagttgagcttgatgcttttgaaataatagcatatgcctacatga |
18388102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 41818151 - 41818240
Alignment:
| Q |
16 |
cagatatagattgtgccccagcaataaaagtttgtgcttttccctgcagttaagttacaccataaaattcagagaaagcaaatcatatga |
105 |
Q |
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| T |
41818151 |
cagatattgaatttgccccagcaataaaagtttgtgctttcccctacaatgaagttacatcacaaaattcagacaaagcaaattatatga |
41818240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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