View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17597_high_12 (Length: 453)

Name: NF17597_high_12
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17597_high_12
NF17597_high_12
[»] chr7 (8 HSPs)
chr7 (12-436)||(46642170-46642594)
chr7 (183-433)||(46651305-46651553)
chr7 (239-385)||(46638433-46638579)
chr7 (241-385)||(46619717-46619861)
chr7 (281-433)||(46173351-46173503)
chr7 (43-142)||(46638234-46638333)
chr7 (105-176)||(46175820-46175891)
chr7 (43-180)||(46619516-46619653)
[»] chr1 (1 HSPs)
chr1 (177-428)||(15768539-15768790)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 436
Target Start/End: Complemental strand, 46642594 - 46642170
Alignment:
Q  12 gaagaaaatgaaacaaccaaaatatcagtcggttgaattgggagatgcttctaggatgactacgaatcttctgaaagaaagtaaaggcgtctgttcaact 111  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46642594 gaagaaaatgaaacaaccaaaatatccgtcggttgaattgggagatgcttctaggatgactacgaatcttctgaaagaaagtaaaggcgtctcttcaact 46642495  T
Q  112 gatgattcacgaagaatggtggaagctaagatggtgctatgtggtaaacagaaaattaacaaaactgatagtgatccaaacaagatggttgaaagccaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642494 gatgattcacgaagaatggtggaagctaagatggtgctatgtggtaaacagaaaattaacaaaactgatagtgatccaaacaagatggttgaaagccaga 46642395  T
Q  212 aaaatcaacacacttctgtgtttggtgataatcgaatgaagaggatcataaaacatgaattcaatcagagagtaatatccggtgattctaatcatgcagc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642394 aaaatcaacacacttctgtgtttggtgataatcgaatgaagaggatcataaaacatgaattcaatcagagagtaatatccggtgattctaatcatgcagc 46642295  T
Q  312 tgttcctattaaaaggaggagattaactgcttgtgtcaaggcagaaaaaagccacatcactgagaattcttcagtaggtttgggatcggataaactggga 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642294 tgttcctattaaaaggaggagattaactgcttgtgtcaaggcagaaaaaagccacatcactgagaattcttcagtaggtttgggatcggataaactggga 46642195  T
Q  412 ttctctcattcttctagctttcaag 436  Q
    |||||||||||||||||||||||||    
T  46642194 ttctctcattcttctagctttcaag 46642170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 183 - 433
Target Start/End: Complemental strand, 46651553 - 46651305
Alignment:
Q  183 tgatccaaacaagatggttgaaagccagaaaaatcaacacacttctgtgtttggtgataatcgaatgaagaggatcataaaacatgaattcaatcagaga 282  Q
    |||| |||||||||||||  | ||||||||||||  |||| | |  ||||||| |||||||||| |||||||||| | ||| ||| ||||||||  ||||    
T  46651553 tgatgcaaacaagatggtcaatagccagaaaaat--acacgcctacgtgtttgatgataatcgactgaagaggataaaaaagcatcaattcaattggaga 46651456  T
Q  283 gtaatatccggtgattctaatcatgcagctgttcctattaaaaggaggagattaactgcttgtgtcaaggcagaaaaaagccacatcactgagaattctt 382  Q
    |||  ||| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||| ||||||  ||| |||||||||||||    
T  46651455 gtacgatcaggtgattctaatcatgcagttgttcctattaaaaggagaagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattctt 46651356  T
Q  383 cagtaggtttgggatcggataaactgggattctctcattcttctagctttc 433  Q
    ||| |||||||||||| || |||||  |||||||||| |||||||||||||    
T  46651355 caggaggtttgggatcagacaaactaagattctctcagtcttctagctttc 46651305  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 239 - 385
Target Start/End: Original strand, 46638433 - 46638579
Alignment:
Q  239 ataatcgaatgaagaggatcataaaacatgaattcaatcagagagtaatatccggtgattctaatcatgcagctgttcctattaaaaggaggagattaac 338  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||||||  || |||||||||||||||||||| |||||||||||| |||||| ||| ||    
T  46638433 ataatcgattgacgaggatcataaaacatcaattcaatcagagagtaaggtcaggtgattctaatcatgcagccgttcctattaaacggaggaaattgac 46638532  T
Q  339 tgcttgtgtcaaggcagaaaaaagccacatcactgagaattcttcag 385  Q
    ||||||||||||  |||| ||||||| |||   ||||||||||||||    
T  46638533 tgcttgtgtcaaatcagagaaaagccgcattgttgagaattcttcag 46638579  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 385
Target Start/End: Original strand, 46619717 - 46619861
Alignment:
Q  241 aatcgaatgaagaggatcataaaacatgaattcaatcagagagtaatatccggtgattctaatcatgcagctgttcctattaaaaggaggagattaactg 340  Q
    |||||| ||| |||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||| |||||| ||| ||||    
T  46619717 aatcgattgacgaggatcataaaacatcaattcaatcggagagtaagatctggtgattctaatcatgcagccgttcctattaaacggaggaaattgactg 46619816  T
Q  341 cttgtgtcaaggcagaaaaaagccacatcactgagaattcttcag 385  Q
    |||||| |||  |||| ||||| | |||   ||||||||||||||    
T  46619817 cttgtgccaaatcagagaaaagtcgcattgttgagaattcttcag 46619861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 433
Target Start/End: Complemental strand, 46173503 - 46173351
Alignment:
Q  281 gagtaatatccggtgattctaatcatgcagctgttcctattaaaaggaggagattaactgcttgtgtcaaggcagaaaaaagccacatcactgagaattc 380  Q
    |||||| ||| ||||| ||| ||||||||| |||||||||||||||||||||||| |||| ||||| ||||| ||| ||||||  ||||| |||||||||    
T  46173503 gagtaagatcaggtgactctgatcatgcagttgttcctattaaaaggaggagattgactgattgtgccaaggaagagaaaagctgcatcattgagaattc 46173404  T
Q  381 ttcagtaggtttgggatcggataaactgggattctctcattcttctagctttc 433  Q
    ||||| |||| ||||||| ||||||||  || | ||||  |||||||||||||    
T  46173403 ttcaggaggtctgggatcagataaactacgaatttctcgatcttctagctttc 46173351  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 46638234 - 46638333
Alignment:
Q  43 gttgaattgggagatgcttctaggatgactacgaatcttctgaaagaaagtaaaggcgtctgttcaactgatgattcacgaagaatggtggaagctaaga 142  Q
    |||||||| | ||||||||||| ||||||||| | |||||||| ||||||||| || | || ||||| ||||||||||| ||| | ||||||||||||||    
T  46638234 gttgaattagaagatgcttctacgatgactactagtcttctgagagaaagtaagggtggctcttcaattgatgattcaccaaggaaggtggaagctaaga 46638333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 46175891 - 46175820
Alignment:
Q  105 ttcaactgatgattcacgaagaatggtggaagctaagatggtgctatgtggtaaacagaaaattaacaaaac 176  Q
    ||||||||||||||||| ||  |||||||||||||||||| || ||||||  ||| ||||||| || |||||    
T  46175891 ttcaactgatgattcaccaatgatggtggaagctaagatgctgatatgtgacaaaaagaaaatcaataaaac 46175820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 46619516 - 46619653
Alignment:
Q  43 gttgaattgggagatgcttctaggatgactacgaatcttctgaaagaaagtaaaggcgtctgttcaactgatgattc-acgaagaatggtggaagctaag 141  Q
    |||||||| | ||||||||||| |||||||||   |||||||| ||||||||| || | || ||||| |||||||||  ||| ||| |||||||||||||    
T  46619516 gttgaattagaagatgcttctacgatgactactggtcttctgagagaaagtaagggtggctcttcaattgatgattcgtcgaggaa-ggtggaagctaag 46619614  T
Q  142 atggtgctatgtggtaaacagaaaattaacaaaactgat 180  Q
    | | || ||||||  ||| |||| || || |||||||||    
T  46619615 aggctggtatgtgacaaaaagaatatcaataaaactgat 46619653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 177 - 428
Target Start/End: Complemental strand, 15768790 - 15768539
Alignment:
Q  177 tgatagtgatccaaacaagatggttgaaagccagaaaaatcaacacacttctgtgtttggtgataatcgaatgaagaggatcataaaacatgaattcaat 276  Q
    ||||| |||| |||| ||||||||||||| ||| | |||||||||| | | || ||||| |||||||||| |||||||||||||||| ||| | ||||||    
T  15768790 tgataatgatgcaaataagatggttgaaaaccaaacaaatcaacacgcctgtgagtttgatgataatcgactgaagaggatcataaagcatcagttcaat 15768691  T
Q  277 cagagagtaatatccggtgattctaatcatgcagctgttcctattaaaaggaggagattaactgcttgtgtcaaggcagaaaaaagccacatcactgaga 376  Q
    | |||||||| ||| ||||| |||||| || ||| |||||||||||||||||| ||||| |||||||||| ||||| ||| ||||||| |||   |||||    
T  15768690 cggagagtaagatcaggtgactctaataatacagttgttcctattaaaaggagaagattgactgcttgtgccaaggaagagaaaagccgcattgttgaga 15768591  T
Q  377 attcttcagtaggtttgggatcggataaactgggattctctcattcttctag 428  Q
    ||||||||| |||||||||||| ||||| || ||||| ||||  ||||||||    
T  15768590 attcttcaggaggtttgggatcagataatcttggattttctccgtcttctag 15768539  T

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