View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_high_15 (Length: 379)
Name: NF17597_high_15
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 18829726 - 18829375
Alignment:
| Q |
18 |
agaaaacaccggagaagatcttgaagatcgtcttctgaatcgatctcattctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcct |
117 |
Q |
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| T |
18829726 |
agaaaacaccggagaagatcttgaagatcgtcttctgaatcgatctcattctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcct |
18829627 |
T |
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| Q |
118 |
cagaatccttctctaccgccaccgtgttcattagtgggctttgtttgggtgcagagtagttgtttgttgtgctaacatccgagaacgttgttgtggagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
18829626 |
cagaatccttctctaccgccaccgtgttcattagtgggctttgtttgggtgcagagtagttgtttgttgtgctaacatccgagaacgtcgtggtggagaa |
18829527 |
T |
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| Q |
218 |
atcatcgctatcatcgatgctacaaacggcgccatatccttcacctgaagttgtagttgaagaacccttactacttgggtttgtgatcctttgcttaatg |
317 |
Q |
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| T |
18829526 |
atcatcgctatcatcgatgctacaaacggcgccatatccttcacctgaagttgtagttgaagaacccttactacttgggtttgtgatcctttgcttaatg |
18829427 |
T |
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| Q |
318 |
aaatttttgggtttttgggttggctttggctcgtgtacttcaattgcctttg |
369 |
Q |
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| T |
18829426 |
aattttttgggtttttgggttggctttggctcgtgtacttgaattgcttttg |
18829375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 18837659 - 18837912
Alignment:
| Q |
18 |
agaaaacaccggagaagatcttgaagatcgtcttctgaatcgatctcattctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcct |
117 |
Q |
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||||||||||| |||||| || ||||||| || || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| | |
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| T |
18837659 |
agaaaacaccgaagaagaactcgaagatcatcctccgaatcgatctcatcctcgaagatcatttgaagcatagagtgtttgaaatcatgatatggattat |
18837758 |
T |
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| Q |
118 |
cagaatccttctctaccgccaccgtgttcattagtgggctttgtttgggtgcagagtagttgtttgttgtgctaacatccgagaacgttgttgtggagaa |
217 |
Q |
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|||||||||| || || |||| ||||| ||||||||| || ||| ||| ||||||||| | ||| || | | || ||||| || || |||||||| |
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| T |
18837759 |
cagaatccttttcaacgaccacagtgtttgatagtgggctatgcttgtgtggagagtagttttgtgtagtttcagcttcagagaaagtggtggtggagaa |
18837858 |
T |
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| Q |
218 |
atcatcgctatcatcgatgctacaaacggcgccatatccttcacctgaagttgt |
271 |
Q |
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| T |
18837859 |
atcgtcgctgtgatcgacgctacaaccggcaccctttcgttcacctaaagttgt |
18837912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 42945806 - 42945882
Alignment:
| Q |
63 |
tcattctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcctcagaatccttctctaccgccac |
139 |
Q |
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|||||||| || |||||||||||||| ||||| |||||||| |||| ||||| |||||||| ||||| |||||||| |
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| T |
42945806 |
tcattctccaatatcatttgaagcatggaatgcctgaaatcaagataaggatcttcagaatctttctccaccgccac |
42945882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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