View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17597_high_20 (Length: 338)
Name: NF17597_high_20
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 3858244 - 3857936
Alignment:
| Q |
19 |
accttgatggttttcactgcaggcctgttatggagtttcaatttggcctcaatttcagtttctgaaagtgatattgctcctgcaacaaaaaatgcccaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858244 |
accttgatggttttcactgcaggcctgttatggagtttcaatttggcttcaatttcagtttctgaaagtgatattgctcctgcaacaaaaaatgcccaaa |
3858145 |
T |
|
| Q |
119 |
gcaacataattgcaaccttgtatttctccattctactttgatatcttctcttcaattttccttaattcaaaaaaccttaatacattcaatataaatctca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858144 |
gcaacataattgcaaccttgtatttctccattctactttgatatcttctcttcaattttccttaattcaaaaaaccttaatacattcaatataaatctca |
3858045 |
T |
|
| Q |
219 |
caaagatgtacaaacatttgtgtgtgtgaaatggcatcataatttgtac-cnnnnnnnntggcatcataattaattggtttttgtttagtcaacaattta |
317 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3858044 |
caaagatatacaaacatttgtgtgtctaaaatggcatcataatttgtacaaaaaaaaaatggcatcataattaattggtttttgtttagtcaacaattaa |
3857945 |
T |
|
| Q |
318 |
tattcttcg |
326 |
Q |
| |
|
|||| |||| |
|
|
| T |
3857944 |
tatttttcg |
3857936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 47942530 - 47942585
Alignment:
| Q |
19 |
accttgatggttttcactgcaggcctgttatggagtttcaatttggcctcaatttc |
74 |
Q |
| |
|
|||||||||| ||||||||||||| |||| | |||||||||||||| |||||||| |
|
|
| T |
47942530 |
accttgatggatttcactgcaggcttgtttagaagtttcaatttggcttcaatttc |
47942585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University