View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_high_25 (Length: 324)
Name: NF17597_high_25
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 34323007 - 34323295
Alignment:
| Q |
17 |
tataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatttgttctaag |
116 |
Q |
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| T |
34323007 |
tataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatttgttctaag |
34323106 |
T |
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| Q |
117 |
acacgaaatggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaatgacccttttgcattggaaggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34323107 |
acacgaaatggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaataacccttttgcattggaaggaa |
34323206 |
T |
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| Q |
217 |
aattaccaacaagaagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcatcttcattatactttgaattgaa |
305 |
Q |
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| T |
34323207 |
aattaccaacaagaagaataatcaagagaattggtataagcgacatgttgagttgttgtagcctcattttcattacactttgaattgaa |
34323295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 34311973 - 34311701
Alignment:
| Q |
8 |
gtcgaagaatataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatt |
107 |
Q |
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| T |
34311973 |
gtcgaacattataacatgtccctctggagtttccttccagtctactctagctggtgacagtgacatggatggttcgtttttttcaactccaaaggggatt |
34311874 |
T |
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| Q |
108 |
tgttctaagacacgaaatggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaatgacccttttgcat |
207 |
Q |
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| T |
34311873 |
tgttctaagacacgaaatggatcggggaaacgatcagaccagagatcggataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcat |
34311774 |
T |
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| Q |
208 |
tggaaggaaaattaccaacaagaagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcat |
283 |
Q |
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| T |
34311773 |
tagaaggaaaataaccaaca---agaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
34311701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33426239 - 33426181
Alignment:
| Q |
17 |
tataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatgg |
75 |
Q |
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|||||||||| | |||||||||||||||||||||||| || | ||||||| |||||||| |
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| T |
33426239 |
tataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatgg |
33426181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 34304836 - 34304888
Alignment:
| Q |
21 |
acatgtccatctggagtttccttccagtctactctagctggtgacattgtcat |
73 |
Q |
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| T |
34304836 |
acatgtccttctggagtttccttccagtctactttaaccggtgacagtgtcat |
34304888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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