View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_high_26 (Length: 319)
Name: NF17597_high_26
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 404340 - 404625
Alignment:
| Q |
18 |
accaacattctgcgttgtacaacccttgttaatctcaagctttgtcacttatctgtggacacacattttccttttacattgccctcacttaaaacacttc |
117 |
Q |
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| T |
404340 |
accaacattctgcgttgtacaacccttgttaatctcaagctttgtcacttatctgtggacacaaattttccttttacattgccctcacttaaaacacttc |
404439 |
T |
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| Q |
118 |
tagctggatgtccagctcttagagatcttcaagcatctcatttatacttcggcgaatctgttccttttgattttcaacaatttgaaagctcaagcttaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
404440 |
tagctggatgtccagctcttagagatcttcaagcatctcatttatacttcggcgaatctgttccttttgattttcaacaatttgaaagctcaagcttaaa |
404539 |
T |
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| Q |
218 |
aatgttgaatagagcag--atattaccctctattattgctattttccgatgaaagcactttcaaatgtggaggggatgcgcataca |
301 |
Q |
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| T |
404540 |
aatgttgaatagagcagatatattaccctctattattgctattttccgatgaaagcactttcaaatgtggaggggatgcgcataca |
404625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 1399259 - 1399341
Alignment:
| Q |
205 |
gctcaagcttaaaaatgttgaatagagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag |
287 |
Q |
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| T |
1399259 |
gctcaagcttaaaaaggttgaacaaagcagatataaccgaccatgattgctattttatggtgaaatcactttcaaatgtggag |
1399341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 965787 - 965722
Alignment:
| Q |
221 |
gttgaatagagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtgga |
286 |
Q |
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| T |
965787 |
gttgaacagagcagatattaccgactgtgaatgctattttccggtgaaatcactttcaaatttgga |
965722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 45810831 - 45810765
Alignment:
| Q |
221 |
gttgaatagagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag |
287 |
Q |
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| T |
45810831 |
gttgaagagagctgatattactatctgttattgctattttccgatgaaagcactttcgaatttggag |
45810765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 10117355 - 10117296
Alignment:
| Q |
228 |
agagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag |
287 |
Q |
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| T |
10117355 |
agagcatatattaccatgtgttattgttatattccgatgaaagcactttcaaatttggag |
10117296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 1446212 - 1446175
Alignment:
| Q |
250 |
attgctattttccgatgaaagcactttcaaatgtggag |
287 |
Q |
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| T |
1446212 |
attgcgatgttccgatgaaagcactttcaaatgtggag |
1446175 |
T |
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