View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17597_high_33 (Length: 269)

Name: NF17597_high_33
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17597_high_33
NF17597_high_33
[»] chr2 (3 HSPs)
chr2 (2-69)||(3083050-3083117)
chr2 (2-69)||(38403845-38403909)
chr2 (142-173)||(38403633-38403664)
[»] chr1 (5 HSPs)
chr1 (6-73)||(33814025-33814092)
chr1 (6-73)||(33873495-33873562)
chr1 (2-57)||(40909811-40909866)
chr1 (142-177)||(33813816-33813851)
chr1 (142-171)||(33873292-33873321)
[»] scaffold0036 (2 HSPs)
scaffold0036 (2-69)||(99435-99499)
scaffold0036 (142-177)||(99219-99254)
[»] chr8 (1 HSPs)
chr8 (142-177)||(36236266-36236301)
[»] chr3 (1 HSPs)
chr3 (142-177)||(31232175-31232210)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 3083117 - 3083050
Alignment:
Q  2 ccctaaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttaca 69  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  3083117 ccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaaccagctgccttaca 3083050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 38403909 - 38403845
Alignment:
Q  2 ccctaaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttaca 69  Q
    ||||||||||||||||||   ||||| |||||||||||| |||||||||| |||||||||||||||||    
T  38403909 ccctaaatgaataaagca---caccaaaaattggacatcattgtaagtaataaacctgctgccttaca 38403845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 38403664 - 38403633
Alignment:
Q  142 tttgcaatcgctacaaaaccaacatgaaccta 173  Q
    ||||||||||||||||||||||||||||||||    
T  38403664 tttgcaatcgctacaaaaccaacatgaaccta 38403633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 33814092 - 33814025
Alignment:
Q  6 aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc 73  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  33814092 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc 33814025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 33873562 - 33873495
Alignment:
Q  6 aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacatacc 73  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  33873562 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacatacc 33873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 40909866 - 40909811
Alignment:
Q  2 ccctaaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacc 57  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  40909866 ccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaacc 40909811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 33813851 - 33813816
Alignment:
Q  142 tttgcaatcgctacaaaaccaacatgaacctatcaa 177  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33813851 tttgcaatcgctacaaaaccaacatgaacctgtcaa 33813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 33873321 - 33873292
Alignment:
Q  142 tttgcaatcgctacaaaaccaacatgaacc 171  Q
    ||||||||||||||||||||||||||||||    
T  33873321 tttgcaatcgctacaaaaccaacatgaacc 33873292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 99499 - 99435
Alignment:
Q  2 ccctaaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttaca 69  Q
    ||||||||||||||||||   ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  99499 ccctaaatgaataaagca---caccaaaaattggacatccttgtaagtaataaacctgctgccttaca 99435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 99254 - 99219
Alignment:
Q  142 tttgcaatcgctacaaaaccaacatgaacctatcaa 177  Q
    ||||||||||||||||||||||||||||||| ||||    
T  99254 tttgcaatcgctacaaaaccaacatgaacctgtcaa 99219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 36236266 - 36236301
Alignment:
Q  142 tttgcaatcgctacaaaaccaacatgaacctatcaa 177  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36236266 tttgcaatcgctacaaaaccaacatgaacctgtcaa 36236301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 31232210 - 31232175
Alignment:
Q  142 tttgcaatcgctacaaaaccaacatgaacctatcaa 177  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31232210 tttgcaatcgctacaaaaccaacatgaacctgtcaa 31232175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University