View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_high_34 (Length: 266)
Name: NF17597_high_34
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_34 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 100 - 266
Target Start/End: Complemental strand, 3083289 - 3083124
Alignment:
| Q |
100 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
199 |
Q |
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| T |
3083289 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
3083191 |
T |
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| Q |
200 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcatt |
266 |
Q |
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| T |
3083190 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttcctcatt |
3083124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 38404072 - 38403950
Alignment:
| Q |
100 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
199 |
Q |
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| T |
38404072 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
38403973 |
T |
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| Q |
200 |
taagatgtagttattccaattaa |
222 |
Q |
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| T |
38403972 |
taagatgtagttattacaattaa |
38403950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 38404220 - 38404139
Alignment:
| Q |
13 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
94 |
Q |
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| T |
38404220 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
38404139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 40910038 - 40909877
Alignment:
| Q |
100 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
199 |
Q |
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| T |
40910038 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
40909940 |
T |
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| Q |
200 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcct |
262 |
Q |
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| T |
40909939 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttcct |
40909877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 33814194 - 33814113
Alignment:
| Q |
13 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
94 |
Q |
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| T |
33814194 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33814113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 33873664 - 33873583
Alignment:
| Q |
13 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
94 |
Q |
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| T |
33873664 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33873583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 99662 - 99540
Alignment:
| Q |
100 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
199 |
Q |
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| T |
99662 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
99563 |
T |
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| Q |
200 |
taagatgtagttattccaattaa |
222 |
Q |
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| T |
99562 |
taagatgtagttattacaattaa |
99540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 99810 - 99729
Alignment:
| Q |
13 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
94 |
Q |
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| T |
99810 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
99729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
| Q |
100 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat |
148 |
Q |
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| T |
24469255 |
gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat |
24469303 |
T |
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