View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17597_high_36 (Length: 260)

Name: NF17597_high_36
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17597_high_36
NF17597_high_36
[»] chr1 (3 HSPs)
chr1 (169-252)||(50679542-50679625)
chr1 (18-97)||(50679341-50679418)
chr1 (184-251)||(45571391-45571456)
[»] chr5 (6 HSPs)
chr5 (169-252)||(21388864-21388947)
chr5 (20-97)||(21388666-21388742)
chr5 (18-96)||(18694710-18694786)
chr5 (169-240)||(18694911-18694981)
chr5 (166-252)||(22818471-22818557)
chr5 (184-252)||(12861856-12861922)
[»] chr4 (1 HSPs)
chr4 (184-252)||(44160149-44160215)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 50679542 - 50679625
Alignment:
Q  169 aatatgaaaattattaaaagaatggtgttgatgcatgtgacagagatgaagggggtgttggtgggtgataaattgattttcttc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50679542 aatatgaaaattattaaaagaatggtgttgatgcatgtgacagagatgaagggggtgtaggtgggtgataaattgattttcttc 50679625  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 50679341 - 50679418
Alignment:
Q  18 taagggttttttcttcttcttctttatttctatgtttatgggcatatgatgtttctacatagaagtggaaattttggaag 97  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50679341 taagggtttttt--tcttcttctttatttctatgtttatgggcatatgatgtttctacatagaagtggaaattttggaag 50679418  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 45571391 - 45571456
Alignment:
Q  184 aaaagaatggtgttgatgcatgtgacagagatgaagggggtgttggtgggtgataaattgattttctt 251  Q
    |||| ||||| |||| ||||||||| |||||||||||| |  |  |||||||||||||||||||||||    
T  45571391 aaaaaaatggcgttgctgcatgtgagagagatgaagggtggat--gtgggtgataaattgattttctt 45571456  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 21388864 - 21388947
Alignment:
Q  169 aatatgaaaattattaaaagaatggtgttgatgcatgtgacagagatgaagggggtgttggtgggtgataaattgattttcttc 252  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  21388864 aatatgaaaattattaaaagaatggtattgatgcatgtgaaagagaagaagggggtgtaggtgggtgataaattgattttcttc 21388947  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 21388666 - 21388742
Alignment:
Q  20 agggttttttcttcttcttctttatttctatgtttatgggcatatgatgtttctacatagaagtggaaattttggaag 97  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21388666 agggtttttt-ttcttcttcttcgtttctatgtttatgggcatatgatgtttctacatagaagtggaaattttggaag 21388742  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 18694710 - 18694786
Alignment:
Q  18 taagggttttttcttcttcttctttatttctatgtttatgggcatatgatgtttctacatagaagtggaaattttggaa 96  Q
    ||||||||||||  |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18694710 taagggtttttt--tcttctccttcatttctatgtttatgggcatatgatgtttctacatagaagtggaaattttggaa 18694786  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 18694911 - 18694981
Alignment:
Q  169 aatatgaaaattattaaaagaatggtgttgatgcatgtgacagagatgaagggggtgttggtgggtgataaa 240  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||    
T  18694911 aatatgaaaattattaaaagaatggcgttgatgcatgtgatagagatgaa-ggggtgtaggtgggtgataaa 18694981  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 22818557 - 22818471
Alignment:
Q  166 gaaaatatgaaaattattaaaagaa--tggtgttgatgcatgtgacagagatgaagggggtgttggtgggtgataaattgattttcttc 252  Q
    ||||||||| ||||| |||||| ||  |||||||| || |||||| ||||||||||||  ||  |||||||||||||||||||||||||    
T  22818557 gaaaatatggaaattgttaaaaaaaaatggtgttgctg-atgtgagagagatgaaggga-tggaggtgggtgataaattgattttcttc 22818471  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 12861922 - 12861856
Alignment:
Q  184 aaaagaatggtgttgatgcatgtgacagagatgaagggggtgttggtgggtgataaattgattttcttc 252  Q
    |||| |||||||||| || |||||| ||||||||||||| ||   ||||||||||||||||||||||||    
T  12861922 aaaaaaatggtgttgctg-atgtgagagagatgaagggg-tgggagtgggtgataaattgattttcttc 12861856  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 44160149 - 44160215
Alignment:
Q  184 aaaagaatggtgttgatgcatgtgacagagatgaagggggtgttggtgggtgataaattgattttcttc 252  Q
    |||| |||||||||| || |||||| ||||||||||||| ||  |||||||||||||||||||||||||    
T  44160149 aaaaaaatggtgttgctg-atgtgagagagatgaagggg-tggaggtgggtgataaattgattttcttc 44160215  T

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