View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17597_high_40 (Length: 241)

Name: NF17597_high_40
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17597_high_40
NF17597_high_40
[»] chr4 (2 HSPs)
chr4 (139-233)||(32838723-32838816)
chr4 (87-145)||(32838835-32838896)
[»] chr3 (2 HSPs)
chr3 (145-236)||(27647141-27647233)
chr3 (97-141)||(27647068-27647112)
[»] chr8 (2 HSPs)
chr8 (41-145)||(1338019-1338126)
chr8 (139-173)||(1338141-1338175)
[»] chr5 (2 HSPs)
chr5 (44-145)||(8589275-8589375)
chr5 (196-230)||(8589147-8589181)
[»] chr1 (2 HSPs)
chr1 (158-235)||(12658127-12658203)
chr1 (45-145)||(12658244-12658347)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 32838816 - 32838723
Alignment:
Q  139 ggaaggatccatcaacagattttagatagatactgtcttttatcttgtgttgaaatataattaattgtgttaatgatttttattggtatgtgttt 233  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||    
T  32838816 ggaaggatccatcaacagattttagatatatattgtcttttatcttgtgttcatct-taattaattgtgttaatgatttttattggtatgtgttt 32838723  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 32838896 - 32838835
Alignment:
Q  87 ttatggaaggttgcatttcctg---aacaactatgtggcttgatatcaaagcagtggaagga 145  Q
    ||||||||||||||||||||||   || |||| ||||||||||||||| || ||||||||||    
T  32838896 ttatggaaggttgcatttcctgaaaaagaactctgtggcttgatatcagagtagtggaagga 32838835  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 27647141 - 27647233
Alignment:
Q  145 atccatcaacagattttagatagatactgtcttttatcttgtgttgaaat-ataattaattgtgttaatgatttttattggtatgtgtttgtc 236  Q
    ||||||||||| | |||||||||||| ||||||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27647141 atccatcaacaaaatttagatagatattgtcttttatctgatgatgaaattataattaattgtgttaatgatttttattggtatgtgtttgtc 27647233  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 27647068 - 27647112
Alignment:
Q  97 ttgcatttcctgaacaactatgtggcttgatatcaaagcagtgga 141  Q
    |||||||||||||| |||| |||||||| |||| |||||||||||    
T  27647068 ttgcatttcctgaagaactttgtggctttatataaaagcagtgga 27647112  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 1338019 - 1338126
Alignment:
Q  41 atgtcttgagactttaacgtacatattataggaagcccttaaggctttatggaaggttgcatttcctgaacaa---ctatgtggcttgatatcaaagcag 137  Q
    ||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||   ||  |||||||||||||  |||||    
T  1338019 atgtcttaagactttaatgtacatattacaggaggcccttaaggctttatggaaggttgcatttcctgaagaagaacttcgtggcttgatatcggagcag 1338118  T
Q  138 tggaagga 145  Q
    ||||||||    
T  1338119 tggaagga 1338126  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 1338141 - 1338175
Alignment:
Q  139 ggaaggatccatcaacagattttagatagatactg 173  Q
    ||||||||||||||||||||||||| |||||||||    
T  1338141 ggaaggatccatcaacagattttaggtagatactg 1338175  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 8589375 - 8589275
Alignment:
Q  44 tcttgagactttaacgtacatattataggaagcccttaaggctttatggaaggttgcatttcctgaacaactatgtggcttgatatcaaagcagtggaag 143  Q
    |||||||||||||| ||||||||| |  ||  |||||||||| |||||||||||||||||| || || |||| ||||||||||||||| || ||||||||    
T  8589375 tcttgagactttaatgtacatattgtcagagacccttaaggcattatggaaggttgcattt-ctaaagaactttgtggcttgatatcagagtagtggaag 8589277  T
Q  144 ga 145  Q
    ||    
T  8589276 ga 8589275  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 8589181 - 8589147
Alignment:
Q  196 taattaattgtgttaatgatttttattggtatgtg 230  Q
    |||||||||||||||||||||||||||||||||||    
T  8589181 taattaattgtgttaatgatttttattggtatgtg 8589147  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 12658203 - 12658127
Alignment:
Q  158 ttttagatagatactgtcttttatcttgtgttgaaatataattaattgtgttaatgatttttattggtatgtgtttgt 235  Q
    ||||||||||| | |||| ||||||||||||| |  | ||||||||||||||||||||||||||||  ||||||||||    
T  12658203 ttttagatagacattgtcctttatcttgtgttcatct-taattaattgtgttaatgatttttattgtcatgtgtttgt 12658127  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 12658347 - 12658244
Alignment:
Q  45 cttgagactttaacgtacatattataggaagcccttaaggctttatggaaggttgcatttcct---gaacaactatgtggcttgatatcaaagcagtgga 141  Q
    ||||||||||||| ||  ||||||||||| ||| ||||||  |||||||||||||| ||| ||   ||| |||| | ||||||||||||| |||||||||    
T  12658347 cttgagactttaatgtggatattataggaggcctttaaggtattatggaaggttgccttttctaaagaagaactctatggcttgatatcagagcagtgga 12658248  T
Q  142 agga 145  Q
    ||||    
T  12658247 agga 12658244  T

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