View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_high_45 (Length: 232)
Name: NF17597_high_45
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 41743943 - 41744031
Alignment:
| Q |
128 |
gcctctataaaagatacgaaatacttgttatgaccgagagtcatcccttacacatccataaacattccagttaaaaattaataacattt |
216 |
Q |
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| T |
41743943 |
gcctctataaaagacacgaaatacttattatgaccgagattcatcccttgcacatccataaacattccagttaaaagttaataatattt |
41744031 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 41743821 - 41743879
Alignment:
| Q |
8 |
aggttaatcaagaagatgaaatcattaaaaacttgtctaatcctccaagaacaacttat |
66 |
Q |
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| T |
41743821 |
aggttaatcaagaagatgaaatcattaaaaacttgcctaatcctccaagaacaacttat |
41743879 |
T |
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