View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17597_high_53 (Length: 218)
Name: NF17597_high_53
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_53 |
 | |
|
| [»] chr6 (9 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 6472281 - 6472498
Alignment:
| Q |
1 |
atcaaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6472281 |
atcaaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggacatgccttctacaaatatgagtttcttccttgttagagg |
6472380 |
T |
|
| Q |
101 |
aagtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttcgaatgataaccttaacaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
6472381 |
aagtccctttctgactgtttctgtaacaaaaccaacacctctttccatttccaccattcatgccattctttccttctcttcaaatgaaaaccttaccaaa |
6472480 |
T |
|
| Q |
201 |
ttcacctttcatcttaac |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6472481 |
ttcacctttcatcttaac |
6472498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 13035068 - 13035192
Alignment:
| Q |
94 |
ttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttcgaatgataacct |
193 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
13035068 |
ttagaggaagtccctttttgactgtttctgtaacaaaaccaacacctctttccatttccaccattcatgccattctttccttttcttcaaatgataacct |
13035167 |
T |
|
| Q |
194 |
taacaaattcacctttcatcttaac |
218 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
13035168 |
taccaaattcacctttcatcttaac |
13035192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 6506421 - 6506243
Alignment:
| Q |
3 |
caaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaa |
102 |
Q |
| |
|
|||| ||| |||| |||||||||| ||||||| |||||||||||| |||| ||||| ||||| |||||||| ||| | |||||||| ||||||||||||| |
|
|
| T |
6506421 |
caaagttctaatggaaaacacataatctcttcttatagtgatctcggtgttaccttagatatcccttcttcaaatctcagtttctttcttgttagaggaa |
6506322 |
T |
|
| Q |
103 |
gtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttc |
181 |
Q |
| |
|
|||| | | ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
6506321 |
gtccttatttgactttttctgtaacaaaaccaacccctctttccatttccaccattcatgccattacttctttctcttc |
6506243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 6461053 - 6461238
Alignment:
| Q |
4 |
aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaag |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||| |||| | | ||||||||||| |||||||| |
|
|
| T |
6461053 |
aaacttccaatgaaaaacatgtagtctcttcctttagtgatctcagtgtcaccttagatatcccttctgccaacctcaccttcttccttgtaagaggaag |
6461152 |
T |
|
| Q |
104 |
tccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttcgaatgata |
189 |
Q |
| |
|
||| ||| | ||| | ||||| ||| || ||||||| ||||| || | || |||||| |||||| ||| || ||||| ||||||| |
|
|
| T |
6461153 |
tccttttttaactttctctgtgacagaatcaacacctctttctatcactactattcattccattcattccttttcttcaaatgata |
6461238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 6529113 - 6528992
Alignment:
| Q |
30 |
tcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaagtccctttctgactgtttctgtaacaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||| || || || ||||| |||| ||||||||||| ||||||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
6529113 |
tcttcctatagtgatctcagtgtcacgttagacattccttcaaccaacatgagtttctttcttgttagaggaagtccttatttgactctttctgtaacaa |
6529014 |
T |
|
| Q |
130 |
aaccaacaccactttccatttc |
151 |
Q |
| |
|
||||| | || ||||||||||| |
|
|
| T |
6529013 |
aaccagcccctctttccatttc |
6528992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 6497619 - 6497513
Alignment:
| Q |
4 |
aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaag |
103 |
Q |
| |
|
||||||||||||||||||| |||| ||||| | |||||||||| |||||||||| ||||| |||||||| ||| | | ||||||||||| |||||||| |
|
|
| T |
6497619 |
aaacttccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctcaccttcttccttgtaagaggaag |
6497520 |
T |
|
| Q |
104 |
tcccttt |
110 |
Q |
| |
|
||||||| |
|
|
| T |
6497519 |
tcccttt |
6497513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 6466249 - 6466132
Alignment:
| Q |
28 |
tctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaagtccctttctgactgtttctgtaac |
127 |
Q |
| |
|
||||||| || | |||||||||||| || |||||||| ||||| || ||| || | || || ||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
6466249 |
tctcttcttacaatgatctcagtgttacattggatataccttcatcaaatctgcggttttttcttgttagaggaagtccctttttgacattctctgtaac |
6466150 |
T |
|
| Q |
128 |
aaaaccaacaccactttc |
145 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
6466149 |
acaaccaacacctctttc |
6466132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 6519802 - 6519922
Alignment:
| Q |
4 |
aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggatatgccttcttccaatatgagtttcttccttgttagaggaag |
103 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| || | ||| |||||||| |||||||| || |||||||| ||| | |||| || |||||||| ||||| |
|
|
| T |
6519802 |
aaacttccaacgaaaaacacataatctcttcttacaatgacctcagtgttaccttggaaatcccttcttcaaatttacgtttttttcttgttaggggaag |
6519901 |
T |
|
| Q |
104 |
tccctttctgactgtttctgt |
124 |
Q |
| |
|
||| ||| |||| ||||||| |
|
|
| T |
6519902 |
tccttttttgacattttctgt |
6519922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 6515419 - 6515473
Alignment:
| Q |
81 |
agtttcttccttgttagaggaagtccctttctgactgtttctgtaacaaaaccaa |
135 |
Q |
| |
|
|||||||| ||||||||||||||||| | | ||||| | |||||||||||||||| |
|
|
| T |
6515419 |
agtttctttcttgttagaggaagtccatatttgactttctctgtaacaaaaccaa |
6515473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 49570153 - 49570068
Alignment:
| Q |
96 |
agaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttccatttccaccattcatgccattctttcattctcttc |
181 |
Q |
| |
|
|||||||||||| | ||||||||||| | ||| |||||||||| ||||| || |||||||||||||| || |||| |||||||| |
|
|
| T |
49570153 |
agaggaagtcccaatttgactgtttctatgacagaaccaacacctctttcaatctccaccattcatgctgttgtttccttctcttc |
49570068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 13535651 - 13535706
Alignment:
| Q |
90 |
cttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttc |
145 |
Q |
| |
|
|||||||| |||||||| ||||||||| | || ||||||||||||||||| ||||| |
|
|
| T |
13535651 |
cttgttaggggaagtccatttctgactttatccgtaacaaaaccaacacctctttc |
13535706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 9664627 - 9664682
Alignment:
| Q |
90 |
cttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacaccactttc |
145 |
Q |
| |
|
|||||||| |||||||| ||||||||| | || ||||||||||||||||| ||||| |
|
|
| T |
9664627 |
cttgttaggggaagtccatttctgactttatccgtaacaaaaccaacacctctttc |
9664682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University