View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_high_6 (Length: 563)
Name: NF17597_high_6
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Complemental strand, 41370520 - 41369982
Alignment:
| Q |
8 |
cgaagaatatactttggagttgtttgacagtagagatacaatgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccataga |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41370520 |
cgaaaaatatactttggagttgtttgacagtagagatacaatgatatgtttcagaaaacttgccatcaaactttgcaacaaaaagtcatcacaccataga |
41370421 |
T |
|
| Q |
108 |
cttcaaaatcaaatacatgaagttgccctacctttgaattctaaatccaaaagtcaaaaggtacatttacaatattaagatttttaacttttatcttttt |
207 |
Q |
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| T |
41370420 |
cttcaaaatcaaatacatgaagttgccctacctttgaattctaaatccaaaagtcaaaaggtacatttacaatattaagatttttaacttttatcttttt |
41370321 |
T |
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| Q |
208 |
aatagtaatcattgatatatttacggttatagttgaaagttaaaaagccacccaaaggtatctaatctctttatgtatagtataaattgnnnnnnnaggg |
307 |
Q |
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| T |
41370320 |
aatagtaatcattgatatatttacgattatagttgaaagttaaaaagccacccaaaggtatctaatctctttatgtatagtataaattgtttttttaggg |
41370221 |
T |
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| Q |
308 |
agtatagattgttgttgttgcgatgagttgaaattaaagatcaatttgataaattgacagagattctgacacctttatattttagatatatatctctaac |
407 |
Q |
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| T |
41370220 |
agtatagattgttgttgttgcgatgagttgaaattaaagatcaatttgataaattgacagagattctgacacctttatattttagatatatatctctaac |
41370121 |
T |
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| Q |
408 |
atgcatatagatgtgtgcgtagttttgtttataatagagtcaaattttaatttcagaaaaggaaatttgaaaatgctagagatcaggcacaaaggagttt |
507 |
Q |
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| T |
41370120 |
atgcatatagatgtgtgcgtagttttgttaataatagagtcaaattttaatttcagaaaaggaaatttgaaaatgctagagatcaggcacaaaggagttt |
41370021 |
T |
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| Q |
508 |
atttttacaaggaacaaaggagtttattcttcctactct |
546 |
Q |
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| T |
41370020 |
atttttacaaggaacaaaggagtttattcttcctactct |
41369982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 15835130 - 15835275
Alignment:
| Q |
15 |
tatactttggagttgtttgacagtagagatacaatgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccatagacttcaaa |
114 |
Q |
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| T |
15835130 |
tatactttggagctgtttggtagtagagatgtgatgatatgcttcaaaaatcttgccatcaaaccttgtgacaagaagtcatcacaccaaagacttcaaa |
15835229 |
T |
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| Q |
115 |
atcaaatacatgaagttgccctacctttgaattctaaatccaaaag |
160 |
Q |
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| T |
15835230 |
atcaaatacaagaagtttacgtacctttgaattctaaatccaaaag |
15835275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 24479913 - 24479751
Alignment:
| Q |
28 |
tgtttgacagtagagatacaatgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccatagacttcaaaatcaaatacatga |
127 |
Q |
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||||||| | ||||||||| ||||| || ||||||||||||||||||||| |||| |||| |||||||| |||||||||| |||||||||||||||||| |
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| T |
24479913 |
tgtttgatattagagatacgatgatatgcttcagaaaacttgccatcaaagattgcgacaagaagtcatcccaccatagacgtcaaaatcaaatacatga |
24479814 |
T |
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| Q |
128 |
agttgccctacctttgaattctaaatccaaaagtcaaaaggtacatttacaatattaagattt |
190 |
Q |
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| T |
24479813 |
agttgtcgtgcctttgaattctaaatccaaaagacataaggtacatttacgacattaagattt |
24479751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 24692269 - 24692402
Alignment:
| Q |
48 |
atgatgtgtttcagaaaacttgccatcaaaccttgcaacaaaaagtcatcacaccatagacttcaaaatcaaatacatgaagttgccctacctttgaatt |
147 |
Q |
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|||||||| ||||||||||||||||| |||| |||| |||| ||||| ||||||||||||||||||||||||||||| ||||||| | ||| |||||||| |
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| T |
24692269 |
atgatgtgcttcagaaaacttgccattaaacgttgcgacaagaagtc-tcacaccatagacttcaaaatcaaatacaagaagttggcgtacttttgaatt |
24692367 |
T |
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| Q |
148 |
ctaaatccaaaagtcaaaaggtacatttacaatatt |
183 |
Q |
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| T |
24692368 |
ctaaatccaaaagtcaaaaag-acatctacaatatt |
24692402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 24479563 - 24479487
Alignment:
| Q |
334 |
gttgaaattaaagatcaatttgataaattgacagagattctgacacctttatattttagatatatatctctaacatg |
410 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||| ||||||||||| || || ||||| ||||| ||||| |
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| T |
24479563 |
gttggaattaaagatcaatttgataaattgaaagagattctaacacctttataattaaggtatatctctcttacatg |
24479487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 24479487 - 24479436
Alignment:
| Q |
426 |
gtagttttgtttataatagagtcaaattttaatttcagaaaaggaaatttga |
477 |
Q |
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|||||||| |||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
24479487 |
gtagttttatttataatagagtcaattttttatttcagaagaggaaatttga |
24479436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 546
Target Start/End: Original strand, 24693560 - 24693621
Alignment:
| Q |
485 |
agagatcaggcacaaaggagtttatttttacaaggaacaaaggagtttattcttcctactct |
546 |
Q |
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||||||||||| |||| | ||||||||| |||| || |||||||||||||| || ||||||| |
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| T |
24693560 |
agagatcaggcgcaaaagtgtttattttcacaacgagcaaaggagtttatttttgctactct |
24693621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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