View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_10 (Length: 467)
Name: NF17597_low_10
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 29009257 - 29009637
Alignment:
| Q |
1 |
aagtaaaatcagctgcaaagttgaggaacaagttagcgagactccagtttttaacatgggtttttgtgctgagaaaaaggccaaatccaaaagggttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
29009257 |
aagtaaaatcagctgcaaagttgaggaacaagttagtgagactccagtttttaacatgggtttgtgtgatgagaaaaaagccaaatccaaaagggttgaa |
29009356 |
T |
|
| Q |
101 |
aggagaagaagaaagcgtttgaatgacaggctttccatgcttaggtcaattgtacctaagatcagcaaggtgattcaatatatataatgtctatgtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009357 |
aggagaagaagaaagcgtttgaatgacaggctttccatgcttaggtcaattgtacctaagatcagcaaggtgattcaatatatataatgtctatgtttta |
29009456 |
T |
|
| Q |
201 |
tgttgtctggctccgacacttcagattgaagatatgtctggtgtttgacacgacaccgatatatgtaattatgttcaattattcttttttgtcaaattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
29009457 |
tgttgtctggctccgacacttcagattgaagatatgtctggtgtttgacacgacaccgatatatataattatgttcagttattcttttttgtcaaattat |
29009556 |
T |
|
| Q |
301 |
tatcggtgtcaagtattagtgttgtgtttggtgttaatgtaaatgctcatagtatgtatatgcatgtgtgttttatatttg |
381 |
Q |
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| T |
29009557 |
tatcggtgtcaagcattagtgttgtgtttggtgttaatgtaaatgctcatagtatgtatatgcatgtgtgttttatttttg |
29009637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 29009734 - 29009806
Alignment:
| Q |
378 |
tttgatataaattcatttgagctaacaagaaaatgtgacatcaattcttggagatacaattgattacatgaaa |
450 |
Q |
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| T |
29009734 |
tttgatataaatgtatttgagctaacaagaaaatgtgacatcaattcttggagatacaattgattacatgaaa |
29009806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 13149511 - 13149418
Alignment:
| Q |
97 |
tgaaaggagaagaagaaagcgtttgaatgacaggctttccatgcttaggtcaattgtacctaagatcagcaaggtgattcaatatatataatgt |
190 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13149511 |
tgaaagaaggagaagaaagcgtttgaatgacaggctttccatgcttaggtcaattgtccctaagatcagcaaggtgattcaatatatataatgt |
13149418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 13149636 - 13149538
Alignment:
| Q |
2 |
agtaaaatcagctgcaaagttgaggaacaagttagcgagactccagtttttaacatgggtttttgtgctgagaaaaaggccaaatccaaaagggttgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
13149636 |
agtaaaatcagctgcaaagttgaggaacaagttagtgagacaccagtttttaacatgggtttgtgtggtgagaaaaaagccaaatccaaaagggttgaa |
13149538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 13149363 - 13149310
Alignment:
| Q |
270 |
tatgttcaattattcttttttgtcaaattattatcggtgtcaagtattagtgtt |
323 |
Q |
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| T |
13149363 |
tatgttcacttattcttttttgtcaaattattatcgatgtcgagtattagtgtt |
13149310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 450
Target Start/End: Complemental strand, 13149159 - 13149123
Alignment:
| Q |
414 |
gacatcaattcttggagatacaattgattacatgaaa |
450 |
Q |
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| T |
13149159 |
gacatcaattcttggagatacaattgattacatgaaa |
13149123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 17428984 - 17429029
Alignment:
| Q |
235 |
tgtctggtgtttgacacgacaccgatatatgtaattatgttcaatt |
280 |
Q |
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|||||||||| |||||||||||||| |||||| ||||| ||||||| |
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| T |
17428984 |
tgtctggtgtctgacacgacaccgagatatgtgattatattcaatt |
17429029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 43015600 - 43015636
Alignment:
| Q |
215 |
gacacttcagattgaagatatgtctggtgtttgacac |
251 |
Q |
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| T |
43015600 |
gacacttctgattgaagatatgtctagtgtttgacac |
43015636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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