View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_14 (Length: 397)
Name: NF17597_low_14
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 34924677 - 34925054
Alignment:
| Q |
8 |
catcatcatttaaggcttctacacttccaagtttaaaacgcaatgtaatgaattccattgaaggtatgccacggagacacaannnnnnnattcagaagct |
107 |
Q |
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| T |
34924677 |
catcatcatttcaggcttctacacttccaagtttaaaacgcaatgtaatgaattccattgaaggtatgccacggagacacaatttttttattcagaagct |
34924776 |
T |
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| Q |
108 |
taaggagaatatattcattgtcggaacacaaagcttccatgtatgagttt-agacgccctttgcatgcaagatgattaacaaatttccaataattttaca |
206 |
Q |
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| T |
34924777 |
taaggagaatatattcattgtcggaacacaaagcttccatgtatgagttttagacgccctttgcatgcaagatgattaacaaatttccaataattttaca |
34924876 |
T |
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| Q |
207 |
ttacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtgg |
306 |
Q |
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| T |
34924877 |
ttacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtgg |
34924976 |
T |
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| Q |
307 |
tcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacaga |
384 |
Q |
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| T |
34924977 |
tcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacaga |
34925054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 129 - 384
Target Start/End: Original strand, 34929166 - 34929421
Alignment:
| Q |
129 |
cggaacacaaagcttccatgtatgagtttagacgccctttgcatgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatag |
228 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||| |
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| T |
34929166 |
cggaacacaaagcttccatatatgagtttagacccccttcccatgcaagtcgattaacacatttccaataattttccattacatccaagtgttacaatag |
34929265 |
T |
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| Q |
229 |
acggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaaccc |
328 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
34929266 |
acggtacatgggggagggacttactagagtagatccctcaccttagaagccagctaacaattcatctataaattgtggtcaagataataatccagaaccc |
34929365 |
T |
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| Q |
329 |
ttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacaga |
384 |
Q |
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|||| ||| | |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34929366 |
ttgcaagatgtgattagaatactgatagaatcaggcatcgaacagaaacaaacaga |
34929421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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