View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_21 (Length: 337)
Name: NF17597_low_21
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 4484255 - 4484555
Alignment:
| Q |
22 |
gataatttacttaatgagattatttataatgaaatatttatattctttacgttgaaaagtgagaatgaaataaataattgttnnnnnnn-gagttcccca |
120 |
Q |
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| T |
4484255 |
gataatttacttaatgagattatttataaagaaatatttatattctttacgttgaaaagtgagaatgaaataaataattgttaaaaaaaagagttcccca |
4484354 |
T |
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| Q |
121 |
cttctcaacatttgatgtatgtgagtttcagcactagactctttgcaaagnnnnnnnttgagaaattcaaacctataaatcataggaaagtgaactatag |
220 |
Q |
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| T |
4484355 |
cttctcaacatttgatgtatgtgagttttagcattagactctttgcaaagaaaaaaattgagaaattcaaacctataaatcataggaaagtgaactatag |
4484454 |
T |
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| Q |
221 |
gttttcannnnnnnnnataggtttcataaaccgaaagaaatcatattttagatgttcatacactaaatgtagttacatctctcaaccaaattcatatttt |
320 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4484455 |
gttttcatttttttttataggtttcataaaccgaaagaaatcatattttagatgttcatacactaaatgtagttacatctctcaaccaaattcatatttt |
4484554 |
T |
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| Q |
321 |
g |
321 |
Q |
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| T |
4484555 |
g |
4484555 |
T |
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