View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_22 (Length: 334)
Name: NF17597_low_22
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5765080 - 5765397
Alignment:
| Q |
1 |
atcaatgccttaatactcagagtgtgagtcatgtacgtgttcatgatgatatacaagattggagcgcctcgcttgtaatgtaaagcgaaaaactcaatta |
100 |
Q |
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| T |
5765080 |
atcaatgccttaatactcagagtgtgagtcatgtacgtgttgatgatgatatacaagattggagcgcctcgcttgtaatgtaaagcgaaaaactcaatta |
5765179 |
T |
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| Q |
101 |
agatcccaagaaaaatgctacatcacgtcagatgggagatgcacttgcaccccgggttcaagtatttttggcaaaagttgagagatatgggggataagag |
200 |
Q |
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| T |
5765180 |
agatcccaagaaaaatgctacatcacgtcagatgggagatgcacttgcaccccgggttcaagtatttttggcaaaagttgagagatatgggggataagag |
5765279 |
T |
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| Q |
201 |
tggcaatgctacttcacgtgtaaaataacagggctttccaagtgtcaagtgagcccttgatgacattgtaaattgtaaagagagggaaaaaatgttctta |
300 |
Q |
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| T |
5765280 |
tggcaatgctacttcacgtgtaaaataacagggctttccaagtgtcaagtgagcccttgatgacattgtaaattgtaaagagagggaaaaaatgttctta |
5765379 |
T |
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| Q |
301 |
ggtggtttgctcacttgt |
318 |
Q |
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| T |
5765380 |
ggtggtttgctcacttgt |
5765397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5770625 - 5770853
Alignment:
| Q |
1 |
atcaatgccttaatactcagagtgtgagtcatgtacgt-----gttcat--gatgatatacaagattggagcgcctcgcttgtaatgtaaagcgaaaaac |
93 |
Q |
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| T |
5770625 |
atcaatgccttaatactcagagtgtgagtcatgtatgatgatagttcagaggatgatctacaagattggagtgcctcgcttgcggtataaagcgaaaaac |
5770724 |
T |
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| Q |
94 |
tcaattaagatcccaagaaaaatgctacatcacgtcagatgggagatgcacttgcaccccgggttcaagtatttttggcaaaagttgagagatatggggg |
193 |
Q |
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| T |
5770725 |
tcaat----atcctaaaaaaaatgctacatcacgtcagatgggagatgcacttgcaccctgggtttaaatatttttggcaaaagttgagagatatgggag |
5770820 |
T |
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| Q |
194 |
ataagagtggcaatgctacttcacgtgtaaaat |
226 |
Q |
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| T |
5770821 |
ataagagtagcaacgccacttcacgtgtaaaat |
5770853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 5771280 - 5771357
Alignment:
| Q |
240 |
aagtgtcaagtgagcccttgatgacattgtaaattgtaaagagagggaaaaaatgttcttaggtggtttgctcacttgt |
318 |
Q |
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| T |
5771280 |
aagtgtcaagtgagcccttgatgacatagtaaattataaagagaggg-aaaaatgtccttaggtggtttgttcacttgt |
5771357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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