View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17597_low_25 (Length: 324)
Name: NF17597_low_25
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 34323007 - 34323295
Alignment:
| Q |
17 |
tataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatttgttctaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34323007 |
tataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatttgttctaag |
34323106 |
T |
|
| Q |
117 |
acacgaaatggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaatgacccttttgcattggaaggaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34323107 |
acacgaaatggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaataacccttttgcattggaaggaa |
34323206 |
T |
|
| Q |
217 |
aattaccaacaagaagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcatcttcattatactttgaattgaa |
305 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
34323207 |
aattaccaacaagaagaataatcaagagaattggtataagcgacatgttgagttgttgtagcctcattttcattacactttgaattgaa |
34323295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 34311973 - 34311701
Alignment:
| Q |
8 |
gtcgaagaatataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatt |
107 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||| || ||| |
|
|
| T |
34311973 |
gtcgaacattataacatgtccctctggagtttccttccagtctactctagctggtgacagtgacatggatggttcgtttttttcaactccaaaggggatt |
34311874 |
T |
|
| Q |
108 |
tgttctaagacacgaaatggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaatgacccttttgcat |
207 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| |||||||| ||||| |||||||||| | |||||||||||||| |
|
|
| T |
34311873 |
tgttctaagacacgaaatggatcggggaaacgatcagaccagagatcggataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcat |
34311774 |
T |
|
| Q |
208 |
tggaaggaaaattaccaacaagaagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcat |
283 |
Q |
| |
|
| |||||||||| ||||||| |||||||||||||||| ||||| || ||||||||||||||| ||||||||| |
|
|
| T |
34311773 |
tagaaggaaaataaccaaca---agaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
34311701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33426239 - 33426181
Alignment:
| Q |
17 |
tataacatgtccatctggagtttccttccagtctactctagctggtgacattgtcatgg |
75 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| || | ||||||| |||||||| |
|
|
| T |
33426239 |
tataacatgttcttctggagtttccttccagtctactttaaccggtgacaatgtcatgg |
33426181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 34304836 - 34304888
Alignment:
| Q |
21 |
acatgtccatctggagtttccttccagtctactctagctggtgacattgtcat |
73 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || | ||||||| |||||| |
|
|
| T |
34304836 |
acatgtccttctggagtttccttccagtctactttaaccggtgacagtgtcat |
34304888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University