View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_28 (Length: 306)
Name: NF17597_low_28
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 42639223 - 42638946
Alignment:
| Q |
18 |
gtggccaatgatcctttagtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgtcatcaaccaaggttttggtgcaaccattagag |
117 |
Q |
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| T |
42639223 |
gtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataacgtgcacggtgtcatcaaccaaggttttggtgcaaccattagag |
42639124 |
T |
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| Q |
118 |
ccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactcaatattgtagtgagttgggtgttgctcc |
217 |
Q |
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| T |
42639123 |
ccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactcaatattgtagtgagttgggtgttgctcc |
42639024 |
T |
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| Q |
218 |
tggtgataaccttacttgctaagctagctagccataca----atacttggtatatatatttgaataaatgatatcata |
291 |
Q |
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| T |
42639023 |
tggtgataaccttacttgctaagctagctagccatacaatatatacttagtatatatatttgaataaatgatatcata |
42638946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 42634146 - 42633903
Alignment:
| Q |
18 |
gtggccaatgatcctttagtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgtcatcaaccaa---ggttttggtgcaaccatta |
114 |
Q |
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| T |
42634146 |
gtggccaatgatcctttagtgtccttcaagacagcattatggtattggatgaatcatgtgcacaatgtcatgaaccaacaaggctttggtgcaacggtta |
42634047 |
T |
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| Q |
115 |
gagccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactcaatattgtagtgagttgggtgttgc |
214 |
Q |
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| T |
42634046 |
gagccattaatggtcgacttgaatgtgacggtgttgaccccaacacagttaaggctcgtgttgattactacactcaatattgtagtcaactgggtgttgc |
42633947 |
T |
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| Q |
215 |
tcctggtgataaccttacttgctaagctagctagccatacaata |
258 |
Q |
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| T |
42633946 |
tcctggtgataagcttaactgctaagctagcaatccatacaata |
42633903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 42628551 - 42628384
Alignment:
| Q |
91 |
accaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactca |
190 |
Q |
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| T |
42628551 |
accaaggctttggtgcaaccactagagccattaatggtcgacttgaatgtgatggtgctaagccaactacagttcagactcgtgttggttgctacactca |
42628452 |
T |
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| Q |
191 |
atattgtagtgagttgggtgttgctcctggtgataaccttacttgctaagctagctagccatacaata |
258 |
Q |
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| T |
42628451 |
atattgtagtcaattgggtgttgctcctggtgataagcttactttctaagctagcaatccatacaata |
42628384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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