View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_29 (Length: 294)
Name: NF17597_low_29
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 39516922 - 39516660
Alignment:
| Q |
14 |
agatgaaaaatagaaatgattatgctgtaagttagaaactcaagaagataacaatacctgtggaaaataaaaaatacacattttagacatggatttgtta |
113 |
Q |
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| T |
39516922 |
agatgaaaaatagaaatgattatgctgtaagttagaaactcaagaagataacaatacctgtggaaaataaaaaatacaaattttagacatggatttgtta |
39516823 |
T |
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| Q |
114 |
acggtcagactaagccattttttggacatccttataacagttaagcttttgcaagattgcctatgaaattaccaacataaaattgataagtcttttgagt |
213 |
Q |
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| T |
39516822 |
acggtcagactaagccatttcttggacatccttataacagttaagcttttgcaagattgcctatgaaattaccaacataaaattgataagtcttttgagt |
39516723 |
T |
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| Q |
214 |
gcatcttggagagtgcttcaatctgataatacttggttatgggtgtcttattggtagcccaac |
276 |
Q |
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| T |
39516722 |
gcatcttggagagtgcttcaatctgataatacttggttatgggtgtcttattggtagcccaac |
39516660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 39529716 - 39529464
Alignment:
| Q |
32 |
attatgctgtaagttagaaactcaagaagataacaatacctgtggaaaataaaaaatacacattttagacatggatttgttaacggtcagactaagccat |
131 |
Q |
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| T |
39529716 |
attatgccggaagttagaaactcaaggagataacaatacctatggaacataaaaaataaaccttatagacatggatttgccaactgttagactaagccat |
39529617 |
T |
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| Q |
132 |
tttttggacatccttataa-------cagttaagctttt-gcaagattgcctatgaaattaccaacataaaattgataagtcttttgagtgcatcttgga |
223 |
Q |
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| T |
39529616 |
ttcttcaacatccatctaagatctaacagttaaactttttgcaacattgcctatgaaatgaccaacaaaatattgataagtgttttgactgcatcttgga |
39529517 |
T |
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| Q |
224 |
gagtgcttcaatctgataatacttggttatgggtgtcttattggtagcccaac |
276 |
Q |
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| T |
39529516 |
gagtgatacaatctgatattacttggttatgggtgtcttattggcagaccaac |
39529464 |
T |
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