View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_3 (Length: 607)
Name: NF17597_low_3
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_3 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 10 - 588
Target Start/End: Complemental strand, 29013104 - 29012526
Alignment:
| Q |
10 |
aagcaaaggcaaaacaatgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtcgaaggttgtggtgcttgttgtaagcttcaaaaaggtc |
109 |
Q |
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| T |
29013104 |
aagcaaaggcaaaacaatgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtggaaggttgtggtgcttgttgtaagcttcaaaaaggtc |
29013005 |
T |
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| Q |
110 |
cttcttatccatctcctgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgttttataagttttaatttgtagtaaattgacctat |
209 |
Q |
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| T |
29013004 |
cttcttatccatctcctgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgttttataagttttaatttgtagtaaattgacctat |
29012905 |
T |
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| Q |
210 |
gtacattctatttagtgtgtattattataatgaattaatgatgattagtatttgtctttgacattggtttattgttttatttatgatttgattatatggc |
309 |
Q |
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| T |
29012904 |
gtacattctatttagtgtttattattataatgaattaatgatgattagtatttgtctttgacattggtttattgttttatttatgatttgattatatggc |
29012805 |
T |
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| Q |
310 |
aatgaattgaatttcagctctacaatagcttaataggaccagatggatggtgtatacattatgaaaagagtagcagaaaatgttccatttactctggtca |
409 |
Q |
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| T |
29012804 |
aatgaattgaatttcagctctacaatagcttaataggaccagatggatggtgtatacattatgaaaagagtagcagaaaatgttccatttactctggtca |
29012705 |
T |
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| Q |
410 |
gtggccacaccatcactctaaagttttgaatgttatgatttcttatgagaatgttagttttggagtttaacttgtatattgttttgttctttttcagagc |
509 |
Q |
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| T |
29012704 |
gtggccacaccatcactctaaagttttgaatgttatgatttcttatgagaatgttagttttggagtttaacttgtatattgttttgttctttttcagagc |
29012605 |
T |
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| Q |
510 |
gtccgtatttttgccgtgcggagcctgaggtgtttgaatctttgtttggagtcaaacagaagaatttcaataaggaggc |
588 |
Q |
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| T |
29012604 |
gtccgtatttttgccgtgcggagcctgaggtgtttgaatctttgtttggagtcaaacagaagaatttcaataaggaggc |
29012526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 232 - 588
Target Start/End: Original strand, 31972 - 32326
Alignment:
| Q |
232 |
tattataatgaattaatgatgattagtatttgtctttgacattggtttattgttttatttatgatttgattatatggcaatgaattgaatttcagctcta |
331 |
Q |
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| T |
31972 |
tattataatga--taatgatgattagtatttctcttttacattggtttattgttttatttatgctttgattatgtggcaatgaattgaatttcagctcta |
32069 |
T |
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| Q |
332 |
caatagcttaataggaccagatggatggtgtatacattatgaaaagagtagcagaaaatgttccatttactctggtcagtggccacaccatcactctaaa |
431 |
Q |
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| T |
32070 |
caatagcttaataggaccagatggatggtgtatacattatgaaaagagtagcagaaaatgttccatttactctggtcagtggccacaccatcactctaaa |
32169 |
T |
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| Q |
432 |
gttttgaatgttatgatttcttatgagaatgttagttttggagtttaacttgtatattgttttgttctttttcagagcgtccgtatttttgccgtgcgga |
531 |
Q |
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| T |
32170 |
gttttgaatgttatgatttcttatgagaatgttagttttggagtttaacttgtatattgttttgttctttttcagagcgtccgtatttttgccgtgcgga |
32269 |
T |
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| Q |
532 |
gcctgaggtgtttgaatctttgtttggagtcaaacagaagaatttcaataaggaggc |
588 |
Q |
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| T |
32270 |
ggctgaggtgtttgaatctttgtttggagtcaaacagaagaatttcaataaggaggc |
32326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 31793 - 31958
Alignment:
| Q |
13 |
caaaggcaaaacaatgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtcgaaggttgtggtgcttgttgtaagcttcaaaaaggtcctt |
112 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
31793 |
caaaggcaaaataatgcaggtttcagcggcgagaagaaggaattgtcgtggcattgcgtggaaggttgtgctgcttgttgtaagcttcaaaaaggtcctt |
31892 |
T |
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| Q |
113 |
cttatccatctcctgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgtttt |
178 |
Q |
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| T |
31893 |
cttatccatctcctgaagaaattttcaccgacccttcagatgttgaggtccattttcctatgtttt |
31958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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