View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_30 (Length: 293)
Name: NF17597_low_30
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 42639211 - 42638946
Alignment:
| Q |
17 |
cctacagtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgtcatcaaccaaggttttggtgcaaccattagagccattaatggtc |
116 |
Q |
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| T |
42639211 |
cctacagtgtccttcaagacagcattatggtattggatgaataacgtgcacggtgtcatcaaccaaggttttggtgcaaccattagagccattaatggtc |
42639112 |
T |
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| Q |
117 |
gacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactcaatattgtagtgagttgggtgttgctcctggtgataacct |
216 |
Q |
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| T |
42639111 |
gacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactcaatattgtagtgagttgggtgttgctcctggtgataacct |
42639012 |
T |
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| Q |
217 |
tacttgctaagctagctagccataca----atacttggtatatatatttgaataaatgatatcata |
278 |
Q |
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| T |
42639011 |
tacttgctaagctagctagccatacaatatatacttagtatatatatttgaataaatgatatcata |
42638946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 42628551 - 42628384
Alignment:
| Q |
78 |
accaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactca |
177 |
Q |
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| T |
42628551 |
accaaggctttggtgcaaccactagagccattaatggtcgacttgaatgtgatggtgctaagccaactacagttcagactcgtgttggttgctacactca |
42628452 |
T |
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| Q |
178 |
atattgtagtgagttgggtgttgctcctggtgataaccttacttgctaagctagctagccatacaata |
245 |
Q |
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| T |
42628451 |
atattgtagtcaattgggtgttgctcctggtgataagcttactttctaagctagcaatccatacaata |
42628384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 42634129 - 42633903
Alignment:
| Q |
22 |
agtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgtcatcaaccaa---ggttttggtgcaaccattagagccattaatggtcga |
118 |
Q |
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| T |
42634129 |
agtgtccttcaagacagcattatggtattggatgaatcatgtgcacaatgtcatgaaccaacaaggctttggtgcaacggttagagccattaatggtcga |
42634030 |
T |
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| Q |
119 |
cttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactcaatattgtagtgagttgggtgttgctcctggtgataacctta |
218 |
Q |
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| T |
42634029 |
cttgaatgtgacggtgttgaccccaacacagttaaggctcgtgttgattactacactcaatattgtagtcaactgggtgttgctcctggtgataagctta |
42633930 |
T |
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| Q |
219 |
cttgctaagctagctagccatacaata |
245 |
Q |
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| T |
42633929 |
actgctaagctagcaatccatacaata |
42633903 |
T |
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