View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17597_low_31 (Length: 277)
Name: NF17597_low_31
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 43236768 - 43236583
Alignment:
| Q |
11 |
gaagaacgcgaagaaaaacgtcttgaacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattgttgtcattcacaagnnnnnn |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43236768 |
gaagaacgcgaagaagaacgtcttgaacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattgttgtcattcacaag-aaaaa |
43236670 |
T |
|
| Q |
111 |
nngaatattttgttaaggtttgctttgatgtaattgttctttgtttcttttatgatgtaagccatgatcatcataagacaagatccc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43236669 |
aagaatattttgttaaggtttgctttgatgtaattgttctttgtttcttttataatgtaagccatgatcatcataagacaagatccc |
43236583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 43227256 - 43227073
Alignment:
| Q |
15 |
aacgcgaagaaaaacgtcttgaacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattgtt-gtcattcacaagnnnnnnnng |
113 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| | | |
|
|
| T |
43227256 |
aacgcgaagaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagacttattgtttgacattcaccaataaaaaatg |
43227157 |
T |
|
| Q |
114 |
aatattttgttaaggtttgctttgatgtaattgttctttgtttcttttatgatgtaagccatgatcatcataagacaagatccc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43227156 |
aatattttgttaaggtttgctttgatgtgattgttctttgtttctctaatgatgtaagcaatgatcatcataagacaagatccc |
43227073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 43244909 - 43244762
Alignment:
| Q |
36 |
aacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattgttgtcattcacaagnnnnnnnngaatattttgttaaggtttgctt |
135 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| | ||||||| |||||||||||||| |
|
|
| T |
43244909 |
aacaacgcgttccttttaaaattattattaaggacaaaaggttttagatttattgttgacattta------------gaatatt--gttaaggtttgctt |
43244824 |
T |
|
| Q |
136 |
tgatgtaattgttctttgtttcttttatgatgtaagccatgatcatcataagacaagatccc |
197 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||| || || ||| |||||||||||||| |
|
|
| T |
43244823 |
tgatgtaattgtttttagtttcttttctgatgtaagctataattatcctaagacaagatccc |
43244762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University