View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_35 (Length: 266)
Name: NF17597_low_35
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 5674639 - 5674887
Alignment:
| Q |
16 |
agacacatgcattcactttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcaatggttttttcgacaaatttattcac |
115 |
Q |
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| T |
5674639 |
agacacatgcattcattttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcgatggttttttcgacaaatttattcac |
5674738 |
T |
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| Q |
116 |
cttattgagagtatgcttagataggagaaaatcatgttcatctattttttctttgtgggtgtaattaccacttgtacttatcacaatatatgagagtagt |
215 |
Q |
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| T |
5674739 |
cttattgagagtatgcttagataggagaaaatcatgttcatctattttttc--tgtgggtgtaattaccacttgtacttatcacaatatatgagagtagt |
5674836 |
T |
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| Q |
216 |
acaccaacaaggttgcaatgcaatccaactcaagaattatattttattttt |
266 |
Q |
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| T |
5674837 |
acaccaacaaggttgcaatgcaatccaactcaagaattatattttattttt |
5674887 |
T |
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