View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17597_low_38 (Length: 249)
Name: NF17597_low_38
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_38 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6472524 - 6472765
Alignment:
| Q |
1 |
cttcctcaccgatcaagttaagtcatgaactttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaa |
100 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||| |
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| T |
6472524 |
cttcctcgccgatcaagctaagtcatgaactttctgagatcacttctgaggccttttccggcatgattcggatagctttgttgccggattccaattcaaa |
6472623 |
T |
|
| Q |
101 |
aaatgaggatgttcttgataagtacagttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaa |
200 |
Q |
| |
|
||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6472624 |
aaacgaagatgtccttgataagtacagttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaa |
6472723 |
T |
|
| Q |
201 |
ggttcaggtgatttactgatgttagcacaccctcttcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6472724 |
ggttcaggtgatttactgatgttagcacaccctcttcatctc |
6472765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 13035229 - 13035463
Alignment:
| Q |
12 |
atcaagttaagtcatgaactttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| || ||||||| |||||||||||| |||||| |
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| T |
13035229 |
atcaagttaagtcatgaactttctgagatcacttctgaggccttttccagcataattcggattgctttatttccggatttcaattcaaaaaacgaggata |
13035328 |
T |
|
| Q |
112 |
ttcttgataagtacag----ttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcag |
207 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||||||||| |||| |||||||||| |||| ||||||||||||||| | ||||||||||||| |
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|
| T |
13035329 |
ttcttgacaagtacacacaattcttgttaccctctgtcaggtgaagttatgatcaaagaaccatttaaggttgagtataagtttaataagaaaggttcag |
13035428 |
T |
|
| Q |
208 |
gtgatttactgatgttagcacaccctcttcatctc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
13035429 |
gtgatttactgatgttagcacaccctcttcatctc |
13035463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6515582 - 6515820
Alignment:
| Q |
1 |
cttcctcaccgatcaagttaagtcatgaactttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaa |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||||| || | |||| |||||| |||||||||| || ||||||||||| ||||||| || ||||| || | || |
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|
| T |
6515582 |
cttcctcaccaatcaagttgagtcatgaaacttttaagattacttctaaggccttttctggtataattcggatcgctttgttgccaaattccgatccgaa |
6515681 |
T |
|
| Q |
101 |
aaatgaggatgttcttgataagtacagttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaa |
200 |
Q |
| |
|
| | ||| | ||||||||| || ||||||||||||||||| |||||||| |||| || | ||| ||||| || ||||||||||||||||||||||| |
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|
| T |
6515682 |
atacaaggctattcttgataggtttagttcttgttaccctttatcaggtgatgctaaacttagtgaaacgttttgtcttgagtataagtttgagaagaaa |
6515781 |
T |
|
| Q |
201 |
ggttcaggtgatttactgatgttagcacaccctcttcat |
239 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |
|
|
| T |
6515782 |
ggttcaggtgatttgttattgttagcacaccctcttcat |
6515820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 6528864 - 6528659
Alignment:
| Q |
36 |
gagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttcttgtt |
135 |
Q |
| |
|
||||| ||||| ||||||||||| || | |||||| ||| |||| || |||||||| |||||||| |||||| ||||||||| | ||| ||| |||| |
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|
| T |
6528864 |
gagataacttccgaggccttttctggcacaattcgaatagctttattgccggattctgattcaaaacatgaggctgttcttgacaggtattgtttctgtt |
6528765 |
T |
|
| Q |
136 |
accctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctct |
235 |
Q |
| |
|
| ||| |||||||||| ||||| |||| |||||| ||| ||||||||||||| | |||||||| |||| |||||||| ||||||||||||||||||| |
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|
| T |
6528764 |
atcctgtgtcaggtgatgctatactcagagaaccattttgtgttgagtataaatgggagaagaagggttggggtgatttgttgatgttagcacaccctct |
6528665 |
T |
|
| Q |
236 |
tcatct |
241 |
Q |
| |
|
|||||| |
|
|
| T |
6528664 |
tcatct |
6528659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 6506149 - 6505940
Alignment:
| Q |
32 |
ttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttct |
131 |
Q |
| |
|
|||| |||| |||||||| |||||||||| ||||||||||| ||||| |||||| ||| |||| ||||| || | ||||||||| | | |||||| |
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|
| T |
6506149 |
ttctcagataacttctgacaccttttccggtataattcggattgctttgctaccgggttctgattcgaaaaacgaagctgttcttgacagatttagttct |
6506050 |
T |
|
| Q |
132 |
tgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacacc |
231 |
Q |
| |
|
||| ||||||| ||||| | |||| |||| |||||| ||| ||||||||||||||||||||||||| | |||||||||||| | | |||||||||| |
|
|
| T |
6506049 |
tgtcaccctttagcaggtaatgctaaactcagagaaccattttgtgttgagtataagtttgagaagaatgtttcaggtgatttgttattattagcacacc |
6505950 |
T |
|
| Q |
232 |
ctcttcatct |
241 |
Q |
| |
|
|||||||||| |
|
|
| T |
6505949 |
ctcttcatct |
6505940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 6461304 - 6461534
Alignment:
| Q |
12 |
atcaagttaagtcatgaactttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatg |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||| || ||||||| || ||||||||||| ||||||| || | |
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|
| T |
6461304 |
atcaagttaagtcatggcctttctgagatcacatctgaggccttttctggtgtaattcgaattgctttgttgacgaattccaattcacaaaatgaagaag |
6461403 |
T |
|
| Q |
112 |
ttcttgataagtacagttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttcag---g |
208 |
Q |
| |
|
||||||| | | ||| ||||||||||| |||| ||||| ||| |||| ||| | |||| | | |||||||||| |||| ||||||||||| | |
|
|
| T |
6461404 |
ttcttgacatggttagtacttgttaccctgtgtctggtgatgcttcattcaatgaagcatttactatggagtataagtgggagacgaaaggttcaggaag |
6461503 |
T |
|
| Q |
209 |
tgatttactgatgttagcacaccctcttcat |
239 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |
|
|
| T |
6461504 |
tgatttgttgatgttagctcaccctcttcat |
6461534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 6497368 - 6497138
Alignment:
| Q |
12 |
atcaagttaagtcatgaactttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatg |
111 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||| || ||||||| || ||||||| || ||||||||||| ||||||| || | |
|
|
| T |
6497368 |
atcaagttaagtcatggcctttctaagatcacttctgaggccttttctggtgtaattcgaattgctttgttgacgaattccaattcacaaaatgaagaag |
6497269 |
T |
|
| Q |
112 |
ttcttgataagtacagttcttgttaccctttgtcaggtgaagctatgctcaaagaaccgtttagtgttgagtataagtttgagaagaaaggttca---gg |
208 |
Q |
| |
|
||||||| | || ||| ||||||||||| |||| || || ||| |||| ||| | |||| | | |||||||| | ||||||||||||||| | |
|
|
| T |
6497268 |
ttcttgacatgtttagtacttgttaccctgtgtctggcgacgcttcattcaatgaagcatttactatggagtataactgggagaagaaaggttcaagtag |
6497169 |
T |
|
| Q |
209 |
tgatttactgatgttagcacaccctcttcat |
239 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |
|
|
| T |
6497168 |
tgatttgttgatgttagctcaccctcttcat |
6497138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 9664811 - 9664929
Alignment:
| Q |
31 |
tttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttc |
130 |
Q |
| |
|
||||||||||||||||||| || |||| || ||||| |||| ||||||| |||||||| ||||||||||||| | ||||||||| |||| || | |
|
|
| T |
9664811 |
tttctgagatcacttctgaagcattttgtggtgtaattaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcac |
9664910 |
T |
|
| Q |
131 |
ttgttaccctttgtcaggt |
149 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
9664911 |
ttgttaccctttatcaggt |
9664929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 13535835 - 13535953
Alignment:
| Q |
31 |
tttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttc |
130 |
Q |
| |
|
||||||||||||||||||| || |||| || ||||| |||| ||||||| |||||||| ||||||||||||| | ||||||||| |||| || | |
|
|
| T |
13535835 |
tttctgagatcacttctgaagcattttgtggtgtaattaggattgctttgttgccggattctgattcaaaaaatgaagctgttcttgacaagtttagcac |
13535934 |
T |
|
| Q |
131 |
ttgttaccctttgtcaggt |
149 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
13535935 |
ttgttaccctttatcaggt |
13535953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 49569972 - 49569871
Alignment:
| Q |
32 |
ttctgagatcacttctgaggccttttccggaataattcggataactttgttaccggattccaattcaaaaaatgaggatgttcttgataagtacagttct |
131 |
Q |
| |
|
|||||||||||||||||| | |||||| | ||||||| |||| ||||| | ||| ||||| ||| ||||||||||||| |||||| | || ||||||| |
|
|
| T |
49569972 |
ttctgagatcacttctgaaccattttcctgcataattcagatagctttgctgccgaattccgattagaaaaatgaggatgatcttgacaggttcagttct |
49569873 |
T |
|
| Q |
132 |
tg |
133 |
Q |
| |
|
|| |
|
|
| T |
49569872 |
tg |
49569871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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