View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_4 (Length: 596)
Name: NF17597_low_4
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Complemental strand, 50209931 - 50209343
Alignment:
| Q |
8 |
gattattctactaaattctcgccatggcttgcatccggaagcttgtctcctcgtctcatacacgaagaggttaaagttgacaataaattctgatttgttt |
107 |
Q |
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| T |
50209931 |
gattattctactaaattctcgccatggcttgcatccggaagcttgtctcctcgtctcatacacgaagaggttaaagttgacaataaattctgatttgttt |
50209832 |
T |
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| Q |
108 |
attacatgatattgaaaaactagactcctttgataaagtattgtctgttcatcataggtgaagagatatgagaatgaaagacaagcaaatagttctacct |
207 |
Q |
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| T |
50209831 |
attacatgatattgaaaaactagactcctttgataaagtattgtctgttcatcataggtgaagagatatgagaatgaaagacaagcaaatagttctacct |
50209732 |
T |
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| Q |
208 |
actggtaacacttcgttttcttattattgtagatctacatcatatttattgatagaattctcttatttgcacttttttagctatttctgaataattcact |
307 |
Q |
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| T |
50209731 |
actggtaacacttcgttttcttattattgtagatctacatcatatttattgatagaattctcttatttgcacttttttagctatttctgaataattcact |
50209632 |
T |
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| Q |
308 |
tatctgtcaagttgtatttcgcacacttgctttaactccatctagaaaaggctagtgcgaaattcagtgccaaagaaagggtaattcttaaggaaagaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
50209631 |
tatctgtcaagttgtatttcgcacacttgctttaactccatctagaaaaggctagtgcaaaattcagtgccaaagaaagggtaatgcttaaggaaagaaa |
50209532 |
T |
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| Q |
408 |
aactaataggagaaaaaccaagctattcattctttaattcttcatgaaagttcagtaatagtagacagttaaataattacacggttcacaccctacatct |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50209531 |
aactaataggagaaaaaccaagctattcattctttaattcttcatgaaagttcagtaatagtagacagttaaataattacacggttgacaccctacatct |
50209432 |
T |
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| Q |
508 |
tcttgtaacacattcttcttctgaatccgtctttattttcacagggttttgttcgagttgatatggagggattactttaggtttttatc |
596 |
Q |
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| T |
50209431 |
tcttgtaacacattcttcttctgaatccgtctttattttcacagggttttgttcgagttgatatggagggattactttaggtttttatc |
50209343 |
T |
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