View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_41 (Length: 240)
Name: NF17597_low_41
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 33376631 - 33376830
Alignment:
| Q |
1 |
ctcttcatttttctttggattttcatgtggaaactaatccgcaggaatagctgaggattttgcggtagcttccct--gtctgacgatgtttcctgcggat |
98 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |
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| T |
33376631 |
ctcttcttttttctttggattttcatgtggaaactaatccgcaggaatagctgaggattttgcggtagcttccctttgtctcacgaagtttcctgcggat |
33376730 |
T |
|
| Q |
99 |
taaaaagctgcaggaacatccgcaggtaactattatattgctgatgactttcctgctgaataattatccaatgagtagtgctattcttgcgattccttag |
198 |
Q |
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| T |
33376731 |
taaaaagctgcaggaacatccgcaggtaactattattttgctgaggattttcttgctgaataattatccaatgagtagtgttattcttgcgattccttag |
33376830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 33377379 - 33377422
Alignment:
| Q |
194 |
cttaggaagttccgcagggattgatgcgatttttcatatagtct |
237 |
Q |
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| T |
33377379 |
cttaggaagttccgcaggaattgatgcgatttttcatatagtct |
33377422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 8144887 - 8144829
Alignment:
| Q |
112 |
gaacatccgcaggtaactattatattgctgatgactttcctgctgaataattatccaat |
170 |
Q |
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| T |
8144887 |
gaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaat |
8144829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 6403417 - 6403359
Alignment:
| Q |
108 |
gcaggaacatccgcaggtaactattatattgctgatgactttcctgctgaataattatc |
166 |
Q |
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| T |
6403417 |
gcaggaacatccgcaggtacctattattttgctgaggatttacctgcggaattattatc |
6403359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 33069216 - 33069353
Alignment:
| Q |
35 |
taatccgcaggaatagctgaggattttgcggtagcttccct--gtctgacgatgtttcctgcggattaaaaagctgcaggaacatccgcaggtaactatt |
132 |
Q |
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||||||||||||||| ||||||||||||| | | || ||| ||| ||||| |||||||||||| | | |||||||| |||||||| ||||||||| |
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| T |
33069216 |
taatccgcaggaatacctgaggattttgctggggtttaccttagtcagacgaagtttcctgcggagttttatgctgcaggtgcatccgcatgtaactatt |
33069315 |
T |
|
| Q |
133 |
atattgctgatgactttcctgctgaataattatccaat |
170 |
Q |
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| T |
33069316 |
attttgctgaggattttcatgcggaattattatccaat |
33069353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 10006398 - 10006354
Alignment:
| Q |
16 |
tggattttcatgtggaaactaatccgcaggaatagctgaggattt |
60 |
Q |
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| T |
10006398 |
tggattttcatgcggaaaataatccgtaggaatacctgaggattt |
10006354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 13655695 - 13655573
Alignment:
| Q |
17 |
ggattttcatgtggaaactaatccgcaggaatagctgaggattttgcggtagct--tccctgtctgacgatgtttcctgcggattaaaaagctgcaggaa |
114 |
Q |
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||||||||||| ||||| ||||| ||||||||| || ||||||||| | |||| || |||||| | | |||||||||||||| ||||||||||| |
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| T |
13655695 |
ggattttcatgcggaaaataatcagcaggaatatcttgggattttgctgcagctaacccttgtctggcaacgtttcctgcggattgttcagctgcaggaa |
13655596 |
T |
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| Q |
115 |
catccgcaggtaactattatatt |
137 |
Q |
| |
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| |||||||||| ||||||||| |
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| T |
13655595 |
cgcccgcaggtaaatattatatt |
13655573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 4609277 - 4609232
Alignment:
| Q |
18 |
gattttcatgtggaaactaatccgcaggaatagctgaggattttgc |
63 |
Q |
| |
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|||||| ||| | ||| ||||||||||||||||||||||||||||| |
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| T |
4609277 |
gatttttatgcgaaaattaatccgcaggaatagctgaggattttgc |
4609232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 17001602 - 17001528
Alignment:
| Q |
80 |
gacgatgtttcctgcggattaaaaagctgcaggaacatccgcaggtaactattatattgctgatgactttcctgc |
154 |
Q |
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| T |
17001602 |
gacgaagtttcctgcggatttagatgccgcaggaacatccacaggtaagtattattttgctaaggattttcctgc |
17001528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 13437077 - 13437027
Alignment:
| Q |
120 |
gcaggtaactattatattgctgatgactttcctgctgaataattatccaat |
170 |
Q |
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||||||||||||||| ||||||| || |||||||| |||| |||||||||| |
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| T |
13437077 |
gcaggtaactattattttgctgaggattttcctgcggaattattatccaat |
13437027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 9607813 - 9607752
Alignment:
| Q |
81 |
acgatgtttcctgcggattaaaaagctgcaggaacatccgcaggtaactattatattgctga |
142 |
Q |
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||||||||||||||| ||| | |||| |||||| ||||||||||||||| ||| ||||||| |
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| T |
9607813 |
acgatgtttcctgcgaattcataagccacaggaaaatccgcaggtaactactattttgctga |
9607752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 9607880 - 9607835
Alignment:
| Q |
17 |
ggattttcatgtggaaactaatccgcaggaatagctgaggattttg |
62 |
Q |
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||||||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
9607880 |
ggattttcatgaggaaaataatccgcaggaatttctgaggattttg |
9607835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 34813770 - 34813854
Alignment:
| Q |
86 |
gtttcctgcggattaaaaagctgcaggaacatccgcaggtaactattatattgctgatgactttcctgctgaataattatccaat |
170 |
Q |
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| T |
34813770 |
gtttcctgcgcattcagatgccgcaggaacatccgtaggtaactattatttagctgagaattttcctgcggaattatcatccaat |
34813854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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