View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_48 (Length: 226)
Name: NF17597_low_48
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 35796409 - 35796613
Alignment:
| Q |
1 |
gtaattggatacaaattaatatctttttaaaaactcttgtttgcccnnnnnnnaagaagctcttgtttaccctttaattatatcattacattcctcttca |
100 |
Q |
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| T |
35796409 |
gtaattgaatacaaattaatatctttttaaaaactcttgtttgccctttttttaagaagctcttgtttaccctttaattatatcattacattcctcttca |
35796508 |
T |
|
| Q |
101 |
tataaaagcaagggaaatgtaaaaaatttcaaacttcaaatttatttattttgttaaggtttacgagtgttcttcaacaagggctcggatattaatcttg |
200 |
Q |
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| T |
35796509 |
tataa--gcaagggaaatgtaaaaaatttcaaacttcaaatttatttattttgttaaggtttacgagtgttcttcaacaaggactcgcatattaatcttg |
35796606 |
T |
|
| Q |
201 |
atattta |
207 |
Q |
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||||||| |
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| T |
35796607 |
atattta |
35796613 |
T |
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