View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_5 (Length: 573)
Name: NF17597_low_5
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 33 - 564
Target Start/End: Original strand, 1864476 - 1865013
Alignment:
| Q |
33 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgtctttataattgctatggtttaatatttggactat |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1864476 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgcctttataattgctatggtttaatatttggactat |
1864575 |
T |
|
| Q |
133 |
catttttaagaggttgataaataaa------cacacacacataagttgcaattgataatttaatttatagactttcaatgtatatccatcccaacgattt |
226 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1864576 |
catttttaagaggttgataaataaaaacacacacacacacacaagttgcaattgataatttaatttatagactttcaatgtatatccatcccaacgattt |
1864675 |
T |
|
| Q |
227 |
ttacatttttgttataataaaaaccgcaattgttttattaagcttctttttccttctcgtctttttagtttggcaaaagcttaaagaagaaaatcctgag |
326 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1864676 |
ttacatttttgttataataaaaaccgcaatagttttattaagtttctttttccttctcgtctttttagtttggcaaaagcttaaagaagaaaatcctgag |
1864775 |
T |
|
| Q |
327 |
ttctttcaagcttattacacaagattggcgttgaagcaacaaattgaacagttcaacacattgttggataaataaaagaaattaatggactcgaaacaaa |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1864776 |
ttctttcaagcttattacacaagattggcgttgaagcaacaaattgaacagttcaacacattgttggataaataaaagaaattaatggactcggaacaaa |
1864875 |
T |
|
| Q |
427 |
taaaagcttcatcatttcctacatctaccggatttcagtatcacgttgttccatcaccaccaaattttaatggatcacatatcaattctagtaggtttct |
526 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1864876 |
taaaagtttcatcatttcctacatctatcggatttcagtatcacgttgttccatcaccaccaaattttaatggatcacatatcaattctagtaggtttct |
1864975 |
T |
|
| Q |
527 |
tcttactttctgacacttatatgcaactctagtataat |
564 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
1864976 |
tcttactttctgacacttatatgcaactctagtataat |
1865013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1863652 - 1863685
Alignment:
| Q |
1 |
gaaattgctaacaacaaatttatatgcctcatta |
34 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
1863652 |
gaaattgctaacaacaaatttatatgcctcatta |
1863685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 288 - 562
Target Start/End: Complemental strand, 51575962 - 51575688
Alignment:
| Q |
288 |
tttttagtttggcaaaagcttaaagaagaaaatcctgagttctttcaagcttattacacaagattggcgttgaagcaacaaattgaacagttcaacacat |
387 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| || |||||| ||| |||||| ||||||||||| ||| | |||||||||||||| | ||| ||| |
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| T |
51575962 |
tttttagtttggcataggcttaaagcagaaaatgatgcgttcttcaaagattattatacaagattggccttgtatcaacaaattgaacaatacaatgcat |
51575863 |
T |
|
| Q |
388 |
tgttggataaataaaagaaattaatggactcgaaacaaataaaagcttcatcatttcctacatctaccggatttcagtatcacgttgttccatcaccacc |
487 |
Q |
| |
|
|| |||| || ||| | |||||| || |||| |||||| | || | |||| | |||| |||| |||||||| |||| ||||||||||||| || |
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| T |
51575862 |
tgctggagaatcaaaggcaattaacggtctcggaacaaaccatagttgcatctctacctatctctaatggatttcatcatcatgttgttccatcactaca |
51575763 |
T |
|
| Q |
488 |
aaattttaatggatcacatatcaattctagtaggtttcttcttactttctgacacttatatgcaactctagtata |
562 |
Q |
| |
|
||||| |||||||||||||||| || |||||| | ||||||||| ||||| ||||||| ||||||||||| |||| |
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|
| T |
51575762 |
aaattctaatggatcacatatccatgctagtaagattcttcttattttctcacacttaaatgcaactctaatata |
51575688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 51576285 - 51576228
Alignment:
| Q |
29 |
tcattaaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacatt |
86 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
51576285 |
tcattaattgttacatgttttaattaattttcaattcttgtttacttaatctcacatt |
51576228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 288 - 418
Target Start/End: Complemental strand, 35441617 - 35441487
Alignment:
| Q |
288 |
tttttagtttggcaaaagcttaaagaagaaaatcctgagttctttcaagcttattacacaagattggcgttgaagcaacaaattgaacagttcaacacat |
387 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| || | ||||| || |
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|
| T |
35441617 |
ttttcagtttggcaaaagcttaatgaacaaaatcctgagttcttcaaagcttattatacaagattggcgttgaagcaacaaatagagaaattcaatgaat |
35441518 |
T |
|
| Q |
388 |
tgttggataaataaaagaaattaatggactc |
418 |
Q |
| |
|
||||||| ||| |||| ||||||||||||| |
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|
| T |
35441517 |
tgttggaaaaacaaaaagaattaatggactc |
35441487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 35450081 - 35449928
Alignment:
| Q |
265 |
taagcttctttttccttctcgtctttttagtttggcaaaagcttaaagaagaaaatcctgagttctttcaagcttattacacaagattggcgttgaagca |
364 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||||||| |||| ||||| ||||||| |||||||| |||||||| || |||||||||||||||||| | |
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| T |
35450081 |
taagtttctttttccccttcatcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaa |
35449982 |
T |
|
| Q |
365 |
acaaattgaacagttcaacacattgttggataaataaaagaaattaatggactc |
418 |
Q |
| |
|
||||| || | ||||||| ||| || ||||| ||||| ||||||| ||||| |
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|
| T |
35449981 |
gcaaatagaggaattcaacaaattaatgcataaacaaaaggaattaatagactc |
35449928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 7239227 - 7239152
Alignment:
| Q |
301 |
aaaagcttaaagaagaaaatcctgagttctttcaagcttattacacaagattggcgttgaagcaacaaattgaaca |
376 |
Q |
| |
|
|||||||| ||||| | ||| |||| ||||| |||||||||| |||||| ||| ||||||||| ||||||||||| |
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|
| T |
7239227 |
aaaagcttgaagaacataatgctgaattcttcaaagcttattatacaagagtggtgttgaagcagcaaattgaaca |
7239152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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