View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_50 (Length: 224)
Name: NF17597_low_50
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 33376286 - 33376428
Alignment:
| Q |
4 |
cacacattgcactaattcgaaatataatgtagccaaggtgctatgctcttgcaagaaatatatcaataattttttaattcctcaaaccaatgtttttcaa |
103 |
Q |
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| T |
33376286 |
cacacattgcactaattcgaaatataatgtagccaaggtgctatgctcttgcaagaaatatatcaataattttttaattcctcaaaccaatgtttttcaa |
33376385 |
T |
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| Q |
104 |
gaaattacatatccatgctaacgacaaattttgatttctcaaa |
146 |
Q |
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| T |
33376386 |
gaaattacatatccatgctaacaacaaattttgatttctcaaa |
33376428 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 33376487 - 33376563
Alignment:
| Q |
148 |
aaaataaaataaaatattgggatttgattttaccaacgccagaaacaccggaggtaaaagtactagtctgcaggtaa |
224 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
33376487 |
aaaataaaataaagtattggaatttgattttaccaacgccagaaacaccggaggtaaaagtattagtctgtaggtaa |
33376563 |
T |
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