View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17597_low_51 (Length: 222)
Name: NF17597_low_51
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 8354848 - 8355038
Alignment:
| Q |
18 |
atatatcctggataactgttttgtttttgttgttgtaagagactcagttcaaaaatacaccctagtctatctattttaataagattacttatctatccta |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8354848 |
atatatcatggataactgttttgtttttgttgttgtaaga--ctcagttcaaaaatacaccctagtctatctattttaataagattacttatctatccta |
8354945 |
T |
|
| Q |
118 |
tcct-----tgaat--tactcggattgctcctttaataatggagtacttggtcattcattttaaaaactatcggttttggtccctttcttata |
203 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8354946 |
tcctatccttgaatattactcggattggtcctttaataatggagtacttggtcattcattttaaaaactatcggttttggtccctttcttata |
8355038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University