View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_7 (Length: 529)
Name: NF17597_low_7
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_7 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 51772597 - 51773112
Alignment:
| Q |
1 |
acacaaacctattcatatctctcggtttctttaaatcaagattttttaaaattcttaatggtatgtatatgtctcatgtacaggttaccattccactaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772597 |
acacaaacctattcatatctctcggtttctctaaatcaagattttttaaaattcttaatggtatgtatatgtctcatgtacaggttaccattccactaaa |
51772696 |
T |
|
| Q |
101 |
gaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772697 |
gaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggt |
51772796 |
T |
|
| Q |
201 |
gtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772797 |
gtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagtt |
51772896 |
T |
|
| Q |
301 |
ggactggaatgaagcttcatgttgcgaggacaaacattataagacagaacttaaatgagatgataaatattatagttgcagatattgggcactgtctttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772897 |
ggactggaatgaagcttcatgttgcgaggacaaacattataagactgaacttaaatgagatgataaatattatagttgcagatattgggcactgtctttg |
51772996 |
T |
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| Q |
401 |
ataagaaggacttcatcgacagtattgatcatcctcaagcacaaaacatcttgctgaattttacctttccacacaagattgaccaattatgacagatgca |
500 |
Q |
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| T |
51772997 |
ataagaaggacttcatcgacagtattgatcatcctcaagcacaaaaca---tgctgaattttacctttccacacaagattgaccaattatgacagatgca |
51773093 |
T |
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| Q |
501 |
catgattcatttcattcat |
519 |
Q |
| |
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||||||||||||||||||| |
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| T |
51773094 |
catgattcatttcattcat |
51773112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 51804277 - 51804454
Alignment:
| Q |
76 |
atgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtgga |
175 |
Q |
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|||| |||||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
51804277 |
atgttcaggttgccattccactgaagaagatcaagtgtgtgaggcagagtcaaaatgttgagaagccaacacaaaagtacataaacatagtcacaatgga |
51804376 |
T |
|
| Q |
176 |
caattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagc |
253 |
Q |
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| T |
51804377 |
caattttgatttctggcttatgggtgtcctaaaatatcagaaaactttcaaatatatcgagcaggcaatttctcaagc |
51804454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 51808238 - 51808401
Alignment:
| Q |
88 |
ccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgattt |
187 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||| ||||||||| |
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| T |
51808238 |
ccattccactgaagaatatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaagatagttacagaagacggttttgattt |
51808337 |
T |
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| Q |
188 |
ctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaa |
251 |
Q |
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|||| |||||||||| | || ||||| ||||| ||||| ||||||||| | |||||||||||| |
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| T |
51808338 |
ctggcttatgggtgttctaaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
51808401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 51780538 - 51780684
Alignment:
| Q |
106 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||| || ||||||||||| || || |||||||| || || ||||||||| ||||||||||||| |
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| T |
51780538 |
tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtctt |
51780637 |
T |
|
| Q |
206 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaag |
252 |
Q |
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| T |
51780638 |
aaaatatcagaaaactttcaaatatctcgagcaggcaatttcacaag |
51780684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 519
Target Start/End: Original strand, 51790262 - 51790345
Alignment:
| Q |
437 |
aagcacaaaacatcttgctgaattttacctttccacacaagattgaccaattatga-cagatgcacatgattcatttcattcat |
519 |
Q |
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||||||||| |||||||| | |||| ||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
51790262 |
aagcacaaaccatcttgcgggatttagtctttccacaaaagattgatcaattataaacagatgcacatgattcatttcattcat |
51790345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 51768085 - 51768127
Alignment:
| Q |
117 |
aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa |
159 |
Q |
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| T |
51768085 |
aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa |
51768127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 51768140 - 51768214
Alignment:
| Q |
191 |
gtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatat |
265 |
Q |
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| T |
51768140 |
gtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatat |
51768214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 7182 - 7327
Alignment:
| Q |
106 |
tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctt |
205 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| || ||||||||||| || || |||||||| || || ||||||||| ||||||||||||| |
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| T |
7182 |
tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtctt |
7281 |
T |
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| Q |
206 |
taattatcataaaacattcaactatctcgagaaagcaatttctcaa |
251 |
Q |
| |
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|| ||||| ||||| ||||| ||||||||| | |||||||||||| |
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| T |
7282 |
aaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaa |
7327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 32908291 - 32908232
Alignment:
| Q |
76 |
atgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttg |
135 |
Q |
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||||||| ||| |||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
32908291 |
atgtacatgttgtcattacacttaagaagatcaagtgtgtgaatcaaagtcaaaatgttg |
32908232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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