View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_8 (Length: 505)
Name: NF17597_low_8
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Complemental strand, 5675436 - 5674958
Alignment:
| Q |
17 |
acagcaaagacttcgcgatgcaatgaatggaagtgaaactgcagaatcaccttctattcacaccaaactaaatgtatattcaggtgatattcaagtttcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675436 |
acagcaaagacttcgcgatgcaatgaatggaagtgaaactgcagaatcaccttctattcacaccaaactaaatgtatattcaggtgatattcaagtttca |
5675337 |
T |
|
| Q |
117 |
aatgaacttacaagcttgcgaagagaaaatgaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagatcgagatttccacgcttaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675336 |
aatgaacttacaagcttgcgaagagaaaatgaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagatcgagatttccacgcttaaat |
5675237 |
T |
|
| Q |
217 |
caactgttaaatcaacagtaaaatcaacggttaacagtcctattgcaaatgcttcaccttctcattctcattctgctgataagcctccactacctcgtaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675236 |
caactgttaaatcaacagtaaaatcaacggttaacagtcctattgcaaatgcttcaccttctcattctcattctgctgataagcctccactacctcgtaa |
5675137 |
T |
|
| Q |
317 |
atcgtttataagttcggtttcaaagaaacttgggaagctttctccttttccacgtttggagggtattgtatctgctaaaggtaaaacaaaaccaaacaag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
5675136 |
atcgtttataagttcggtttcaaagaaacttgggaagctttctccttttccacgtttggatggtattgtatctgctaaaggtaaaataaaaccaaacaag |
5675037 |
T |
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| Q |
417 |
aatcgacgacactctatttcctgaggtcatgaaaataaatacaggagtactatgttttctagttttgtttttgcttcat |
495 |
Q |
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| T |
5675036 |
aatcgacgacactctatttcctgaggtcatgaaaataaatacaggagtactatgttttctagttttgtttttgcttcat |
5674958 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 39780485 - 39780545
Alignment:
| Q |
136 |
gaagagaaaatgaagacctcaaattagaggtagtgaagttgaaaatgaaactaaaagagat |
196 |
Q |
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|||||||||||||||| || ||||||||| ||||||| | ||||| ||| |||||||||| |
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| T |
39780485 |
gaagagaaaatgaagaactgaaattagagatagtgaaacttaaaataaaaataaaagagat |
39780545 |
T |
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