View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17597_low_9 (Length: 482)
Name: NF17597_low_9
Description: NF17597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17597_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 53 - 461
Target Start/End: Original strand, 56161294 - 56161697
Alignment:
| Q |
53 |
atatatgtattgatggagtaaatttaaagtactagtagtaataatgaaaaaggtaacatatatacaggttaaggtagaaatgatgcttattgagggtgac |
152 |
Q |
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| T |
56161294 |
atatatgtattgatggagtaaatttgaagtattagtagtaataatgaaaagggtaacata----caggttaaggtagaaatgatgcttattgagggtgac |
56161389 |
T |
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| Q |
153 |
aacgttggtgaagccattgtggaccttgtagggaatctaaatataaggaaattggtgattggaactacccaatctaatctaaggtaacatactttgtcta |
252 |
Q |
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| T |
56161390 |
aacgttggtgaagccattgtggaccttgtagggaatctaaatataaggaaattggtgattggaactacccaatctaatctaaggtaacaaccattgtcta |
56161489 |
T |
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| Q |
253 |
caactcatgtgtgaca--acactacattaattaataacatgatctaaatgtttttattattatttgaatttgaataatgagtagcaaaaaagggacagga |
350 |
Q |
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| T |
56161490 |
caactcatgtgtgacactacactacattaattaataacatgatctaaatgttt---ttattatttgaatttgaatattgagtagcaaaaaagggccagga |
56161586 |
T |
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| Q |
351 |
aggcaaaattccattgcggacatggtgttaaaaacggtacaagaaagttgtgatgtcaaaatcatatgtgaaggaaaagaagtgatcgaccagatgatta |
450 |
Q |
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| T |
56161587 |
aagcaaaattccattgcggacatggtgttaaaaaccgtacaagaaagttgtgatgtcaaaatcatatgtgaaggaaaagaagtaatcgatcagatgatta |
56161686 |
T |
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| Q |
451 |
atgggttcagt |
461 |
Q |
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| T |
56161687 |
atgggttcagt |
56161697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 55761779 - 55761673
Alignment:
| Q |
161 |
tgaagccattgtggaccttgtagggaatctaaatataaggaaattggtgattggaactacccaatctaatctaaggtaacatactttgtctacaactcat |
260 |
Q |
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| T |
55761779 |
tgaagccattgtggaccgtgtagggagtctaaataaaag-aaattggtgattggaactacccaatctaatctaaggtaccacacgtggtctacaagtcaa |
55761681 |
T |
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| Q |
261 |
gtgtgaca |
268 |
Q |
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| T |
55761680 |
gtgtgaca |
55761673 |
T |
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