View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17598_high_3 (Length: 228)
Name: NF17598_high_3
Description: NF17598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17598_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 35670683 - 35670478
Alignment:
| Q |
11 |
tagataatactaacgggtttttataaaaatttgtgtactcaatacattaaaaattaaatgatttcattttttaaaagaannnnnnngatttgagatactt |
110 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
35670683 |
tagaaaatactaacgagtttttataaaaatttgtgtactcaatacattaaaaattaaataatttcattttttaaaagaatttttttgatttgagatactt |
35670584 |
T |
|
| Q |
111 |
aaagaatgccctaatgt------aaaccttctttaattaattgatccagaagagtgtgaatagggacaaggacaacttaggttgtatttggtaacaacaa |
204 |
Q |
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| T |
35670583 |
aaagaatgccctaatgtaagcaaaatccttctttaattaattgatccagaagagtgtgaatagggacaaggacagcttaggttgtgtttggtaacaacaa |
35670484 |
T |
|
| Q |
205 |
gaagct |
210 |
Q |
| |
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|||||| |
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|
| T |
35670483 |
gaagct |
35670478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 40998401 - 40998441
Alignment:
| Q |
28 |
tttttataaaaatttgtgtactcaatacattaaaaattaaa |
68 |
Q |
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|
| T |
40998401 |
tttttatgaaaatttgtgtatttaatacattaaaaattaaa |
40998441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 18842275 - 18842314
Alignment:
| Q |
29 |
ttttataaaaatttgtgtactcaatacattaaaaattaaa |
68 |
Q |
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| T |
18842275 |
ttttataaaagtttgtgtaatcaatacattaaaaattaaa |
18842314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 16944853 - 16944806
Alignment:
| Q |
27 |
gtttttataaaaatttgtgtactcaatacattaaaaatt-aaatgatt |
73 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||| |||||||| |
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|
| T |
16944853 |
gtttttataaaaatttgtgtattcaatacattgaaaattgaaatgatt |
16944806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 17015518 - 17015471
Alignment:
| Q |
27 |
gtttttataaaaatttgtgtactcaatacattaaaaatt-aaatgatt |
73 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||| |||||||| |
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| T |
17015518 |
gtttttataaaaatttgtgtattcaatacattgaaaattgaaatgatt |
17015471 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 11071837 - 11071775
Alignment:
| Q |
27 |
gtttttataaaaatttgtgtactcaatacattaaaaattaaatgatttcattttttaaaagaa |
89 |
Q |
| |
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|||| ||||||||||||| || |||||| ||||||||| ||| |||| |||||||||||||| |
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|
| T |
11071837 |
gtttgtataaaaatttgtatattcaatatattaaaaatgaaagtatttaattttttaaaagaa |
11071775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 40291394 - 40291455
Alignment:
| Q |
28 |
tttttataaaaatttgtgtactcaatacattaaaaattaaatgatttcattttttaaaagaa |
89 |
Q |
| |
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|||| ||||||| ||||||| |||||||||||||||||| | | || |||||||||||||| |
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| T |
40291394 |
ttttaataaaaaattgtgtattcaatacattaaaaattataataattaattttttaaaagaa |
40291455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 39568348 - 39568404
Alignment:
| Q |
30 |
tttataaaaatttgtgtactcaatacattaaaaattaaatgatttcattttttaaaa |
86 |
Q |
| |
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||||||||||| ||||| ||||||||||| |||||||| |||| ||||||||||| |
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| T |
39568348 |
tttataaaaataagtgtattcaatacattagaaattaaaatatttaattttttaaaa |
39568404 |
T |
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