View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17598_low_2 (Length: 402)
Name: NF17598_low_2
Description: NF17598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17598_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 92 - 356
Target Start/End: Complemental strand, 36935772 - 36935504
Alignment:
| Q |
92 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacac---cttgatcagg |
188 |
Q |
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| T |
36935772 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacacgaccttgatcagg |
36935673 |
T |
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| Q |
189 |
tttactttcagttcgtgatgccaaaaaa-gatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaagcacatat |
287 |
Q |
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| T |
36935672 |
tttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaagaagcacatat |
36935573 |
T |
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| Q |
288 |
aacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttca |
356 |
Q |
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| T |
36935572 |
aacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttca |
36935504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 173 - 347
Target Start/End: Complemental strand, 36956542 - 36956367
Alignment:
| Q |
173 |
taacaccttgatcaggtttactttcagttcgtgatgccaa-aaaagatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaag |
271 |
Q |
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| T |
36956542 |
taacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaag |
36956443 |
T |
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| Q |
272 |
gaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaa |
347 |
Q |
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| T |
36956442 |
gaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaa |
36956367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 36948407 - 36948291
Alignment:
| Q |
231 |
gaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaa |
330 |
Q |
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| T |
36948407 |
gaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaatcaatgtcataaccagaa |
36948308 |
T |
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| Q |
331 |
acacattggacaaccaa |
347 |
Q |
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| T |
36948307 |
acacatttgccaaccaa |
36948291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 36935811 - 36935780
Alignment:
| Q |
10 |
agaagaacatacatatttagtcaaaataggca |
41 |
Q |
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| T |
36935811 |
agaagaacatacatatttagtcaaaataggca |
36935780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 181 - 347
Target Start/End: Original strand, 12493290 - 12493457
Alignment:
| Q |
181 |
tgatcaggtttactttcagttcgtgatgccaaaaaa-gatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaa |
279 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||| | || ||||||||||||| ||| || ||||||||||||| |||| |||||||| | |
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| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
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| Q |
280 |
gcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaa |
347 |
Q |
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| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaa |
12493457 |
T |
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