View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17598_low_3 (Length: 267)

Name: NF17598_low_3
Description: NF17598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17598_low_3
NF17598_low_3
[»] chr3 (2 HSPs)
chr3 (1-253)||(2840403-2840655)
chr3 (2-183)||(30832887-30833068)
[»] chr7 (2 HSPs)
chr7 (2-241)||(6925445-6925684)
chr7 (111-183)||(27338360-27338432)
[»] chr4 (2 HSPs)
chr4 (2-241)||(500699-500938)
chr4 (41-241)||(35903316-35903517)
[»] chr1 (8 HSPs)
chr1 (2-241)||(20375530-20375769)
chr1 (2-241)||(13594092-13594335)
chr1 (4-241)||(13675634-13675871)
chr1 (3-241)||(20483936-20484168)
chr1 (11-241)||(38289950-38290171)
chr1 (112-166)||(28958774-28958828)
chr1 (192-241)||(1955045-1955094)
chr1 (2-35)||(592758-592791)
[»] scaffold0006 (2 HSPs)
scaffold0006 (4-236)||(179792-180024)
scaffold0006 (4-241)||(173215-173453)
[»] chr2 (2 HSPs)
chr2 (16-241)||(37981048-37981274)
chr2 (5-183)||(4880863-4881045)
[»] chr5 (1 HSPs)
chr5 (5-235)||(38551284-38551515)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 2840403 - 2840655
Alignment:
Q  1 ccataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2840403 ccataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttctttgtaagatttgcaaa 2840502  T
Q  101 atannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtca 200  Q
    |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  2840503 atatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcttttttttcttctgtca 2840602  T
Q  201 ttgtttctatttgttttatgattgtctttgttttaacattatatgtggttatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2840603 ttgtttctatttgttttatgattgtctttgttttaacattatatgtggttatt 2840655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 30833068 - 30832887
Alignment:
Q  2 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  30833068 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttgtaagatttgcaaaa 30832969  T
Q  102 tannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc 183  Q
    ||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30832968 tatttttttgtaattctaatcttttagcatcataagtaattttgttcgaattcaaattgatctctgaagttagaatcccctc 30832887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 6925684 - 6925445
Alignment:
Q  2 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||     
T  6925684 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttgtaagatttgcaaat 6925585  T
Q  102 tannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtcat 201  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  6925584 tatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcttttttttcttctgtcat 6925485  T
Q  202 tgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6925484 tgtttctatttgttttatgattgtctttgttttaacatta 6925445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 27338360 - 27338432
Alignment:
Q  111 gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc 183  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27338360 gtaattctaatcttttagcatcataaatagttttgttcgaattcaaattgatctctgaagttagaatcccctc 27338432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 500938 - 500699
Alignment:
Q  2 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||     
T  500938 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttgtaagatttgcaaat 500839  T
Q  102 tannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtcat 201  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  500838 tatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcttttttttcttctgtcat 500739  T
Q  202 tgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  500738 tgtttctatttgttttatgattgtctttgttttaacatta 500699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 35903517 - 35903316
Alignment:
Q  41 ttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaatannnnnnn-gtaattctaatcttttagcatcataagta 139  Q
    |||||||||||| || |||||||||||||| ||||||||||| ||| ||||||||||||||||        |||||||||||||||||||||||||||||    
T  35903517 ttgaaaaaagaatagaatttacgtattaatcgaacaaatcttctttttaagatttgcaaaatattttttttgtaattctaatcttttagcatcataagta 35903418  T
Q  140 gttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtcattgtttctatttgttttatgattgtctttgttttaacat 239  Q
    ||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35903417 gttttgttcgaattcaaattgatctctgaagttagaatcacctctttttcttcttctgtcattgtttctatttgttttatgattgtctttgttttaacat 35903318  T
Q  240 ta 241  Q
    ||    
T  35903317 ta 35903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 20375530 - 20375769
Alignment:
Q  2 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  20375530 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttttaagatttgcaaaa 20375629  T
Q  102 tannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtcat 201  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  20375630 tatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcttttttttcttctgtcat 20375729  T
Q  202 tgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  20375730 tgtttctatttgttttatgattgtctttgttttaatatta 20375769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 13594092 - 13594335
Alignment:
Q  2 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| | ||||||||||||||||    
T  13594092 cataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaatagtatttacgtattaatcgaacaaatcttctatgtaagatttgcaaaa 13594191  T
Q  102 ta----nnnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctg 197  Q
    ||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  13594192 tatttttttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcttttttttcttctg 13594291  T
Q  198 tcattgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13594292 tcattgtttctatttgttttatgattgtctttgttttaacatta 13594335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 13675634 - 13675871
Alignment:
Q  4 taaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaata 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  13675634 taaaaggatatctatgtatatcccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttttaagatttgcaaaata 13675733  T
Q  104 nnnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccc---tcnnnnnnnncttctgtca 200  Q
           ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||   |         |||||||||    
T  13675734 tttttttgtaattctaatcttttag---cataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctttttttttttttcttctgtca 13675830  T
Q  201 ttgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13675831 ttgtttctatttgttttatgattgtctttgttttaacatta 13675871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 20483936 - 20484168
Alignment:
Q  3 ataaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaat 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||        ||| ||||||||||| ||| |||||||||||||||    
T  20483936 ataaaaggatatctatgtataccccttctattaaaattttgaaaaaagaataggatt--------aatcgaacaaatcttctttttaagatttgcaaaat 20484027  T
Q  103 annnnnnn-gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc-nnnnnnnncttctgtca 200  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         |||||||||    
T  20484028 attttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagtatcccctctttttttttcttctgtca 20484127  T
Q  201 ttgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20484128 ttgtttctatttgttttatgattgtctttgttttaacatta 20484168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 38290171 - 38289950
Alignment:
Q  11 atatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaatannnnnnn 110  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||            ||||||||||||||||||           
T  38290171 atatctatgtataccccttctatcaaaattttgaaaaaagaataggatttacgtattaatcga------------tgtaagatttgcaaaatattttttt 38290084  T
Q  111 -gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc--nnnnnnnncttctgtcattgtttc 207  Q
     |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| ||||||| |||||          ||||||||||||||||    
T  38290083 tgtaattctaatcttttaatattataagtagttttgttcgaattcaaattgatctctgaaattagaattccctcttttttttttcttctgtcattgtttc 38289984  T
Q  208 tatttgttttatgattgtctttgttttaacatta 241  Q
    ||||| ||||||||||||||||||||||||||||    
T  38289983 tatttattttatgattgtctttgttttaacatta 38289950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 28958774 - 28958828
Alignment:
Q  112 taattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 166  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28958774 taattctaatcttttagcgtcataagtagttttgttcgaattcaaattgatctct 28958828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 1955094 - 1955045
Alignment:
Q  192 cttctgtcattgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1955094 cttctgtcattgtttctatttgttttatgattgtctttgttttaacatta 1955045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 592791 - 592758
Alignment:
Q  2 cataaaaggatatctatgtataccccttctatga 35  Q
    ||||||||||||| ||||||||||||||||||||    
T  592791 cataaaaggatatttatgtataccccttctatga 592758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 179792 - 180024
Alignment:
Q  4 taaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaata 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  179792 taaaaggatatctatgtatatcccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttttaagatttgcaaaata 179891  T
Q  104 nnnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtcattg 203  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          || ||||||||    
T  179892 tttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctttttttttttttttgtcattg 179991  T
Q  204 tttctatttgttttatgattgtctttgttttaa 236  Q
    |||||||||||||||||||||||||||||||||    
T  179992 tttctatttgttttatgattgtctttgttttaa 180024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 173215 - 173453
Alignment:
Q  4 taaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaata 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  173215 taaaaggatatctatgtatatcccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttttaagatttgcaaaata 173314  T
Q  104 nnnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccc----tcnnnnnnnncttctgtc 199  Q
           ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    |         ||||||||    
T  173315 tttttttgtaattctaatcttttag---cataagtagttttgttcgaattcaaattgatctctgaagttagaatccccttttttttttttttcttctgtc 173411  T
Q  200 attgtttctatttgttttatgattgtctttgttttaacatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  173412 attgtttctatttgttttatgattgtctttgttttaacatta 173453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 37981274 - 37981048
Alignment:
Q  16 tatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaata-nnnnnnngtaa 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||         |||    
T  37981274 tatgtataccccttctatgaaaattttgaaaaaagaataggatttacgtattaatcgaacaaatcttctttgtaagatttgcaaaatattttttttttaa 37981175  T
Q  115 ttctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtcattgtttctatttgt 214  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||    
T  37981174 ttttaatcttttagcatcataagtagttttgtttgaattcaaattgatctctgaagttagaatcccctcttttttttcttctgtcattgtttttatttgt 37981075  T
Q  215 tttatgattgtctttgttttaacatta 241  Q
    |||||||||||||||||||||||||||    
T  37981074 tttatgattgtctttgttttaacatta 37981048  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 4880863 - 4881045
Alignment:
Q  5 aaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggattt--acgtattaatt---gaacaaatcttttttgtaagatttgcaa 99  Q
    ||||||||||||||||| ||  ||||||||||||||||||| |||||| |||||||  | ||||||||    |||||  |||| || |||||||||||||    
T  4880863 aaaaggatatctatgtagacttcttctatgaaaattttgaagaaagaataggatttttaggtattaatcatcgaacatttcttcttcgtaagatttgcaa 4880962  T
Q  100 aatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc 183  Q
     ||         ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  4880963 tatttttttta-taattataatcttttagcattataagtagttttgttcgaattcaaattgatctctaaagttagaaacccctc 4881045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 38551284 - 38551515
Alignment:
Q  5 aaaaggatatctatgtataccccttctatgaaaattttgaaaaaagaaaaggatttacgtattaattgaacaaatcttttttgtaagatttgcaaaatan 104  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| || | ||||||||||||||| ||||||||||| ||||| ||||||||||||||     
T  38551284 aaaaggatatctatgtataccccttcaatgaaaatattgaaaaaataataagatttacgtattaatcgaacaaatcttctttgtcagatttgcaaaatat 38551383  T
Q  105 nnnnnn-gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcnnnnnnnncttctgtcattg 203  Q
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||    
T  38551384 tttttttgtaattataatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctcttctttttcttctttcattg 38551483  T
Q  204 tttctatttgttttatgattgtctttgtttta 235  Q
    ||||||||||||||||||||||||||||||||    
T  38551484 tttctatttgttttatgattgtctttgtttta 38551515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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