View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17599_high_1 (Length: 482)
Name: NF17599_high_1
Description: NF17599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17599_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 44727950 - 44727643
Alignment:
| Q |
30 |
aaaacatggtctccaaattgtttaggacgactctattaccgttaacttgcatataagcatgatcaatatcacacatacaaccttggttggatcctctccg |
129 |
Q |
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| T |
44727950 |
aaaacatggtctccaaattgtttaggacgactctattaccgttaacttgcatataagcacgatcaatatcacacatacaaccttggttggatcctctccg |
44727851 |
T |
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| Q |
130 |
gacactcctaggccatagcatacacccaaatgttaaatatttataatacgtcgagatgacgaagccaatgtgattaatgtacgggaggacctagtccata |
229 |
Q |
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| T |
44727850 |
aacactcctaggccatagcatacacccaaatgttaaatatttataatacgtcgagatgacgaagccaatgtgattaatgtacgggaggacctagtccata |
44727751 |
T |
|
| Q |
230 |
-ctaggaagcttaagagcaactcaataccaacgagaatagattcaaccatcaaggagaatgaaactcgacaagacgttcaatttttggtcaaaatactac |
328 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
44727750 |
cctaggaagctgaagagcaactcaataccaacgagaatagattcaaccatcaaggagaatgaaactcaacaagacgttcaacttttagtcaaaatactac |
44727651 |
T |
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| Q |
329 |
ccccataa |
336 |
Q |
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| T |
44727650 |
cctcataa |
44727643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 332 - 450
Target Start/End: Complemental strand, 44726435 - 44726317
Alignment:
| Q |
332 |
cataaatatgttaggaagattgatcgttaatagagaactgaaattcaatattgatcaacatactacccttaatttcattgttaaaatataataagggtag |
431 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44726435 |
cataaatatgttagaaagattgatcgttaatagagaactgaaattcaatattgatcaatatactacccttaatttcattgttaaaatataataagggtag |
44726336 |
T |
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| Q |
432 |
tatggctcaccaatgatga |
450 |
Q |
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| T |
44726335 |
tatggctgaccaatgatga |
44726317 |
T |
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