View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17599_high_15 (Length: 314)

Name: NF17599_high_15
Description: NF17599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17599_high_15
NF17599_high_15
[»] chr2 (2 HSPs)
chr2 (13-314)||(45400824-45401127)
chr2 (13-314)||(27362606-27362906)
[»] chr6 (1 HSPs)
chr6 (218-254)||(8484201-8484237)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 45400824 - 45401127
Alignment:
Q  13 aaaatacgagacaagtatttgtgacttataaatataaaaatagagggaaagtattttttaaagctacatnnnnnnntgagacacatatttatcggaaagt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  45400824 aaaatacgagacaaatatttgtgacttataaatataaaaatagagggaaagtattttttaaagctacataaaaaaatgagacacatatttatcggaaagt 45400923  T
Q  113 atttttcaaagctacatnnnnnnnntgagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttatcattgaagcata 212  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45400924 atttttcaaagctacataaaaaaa-tgagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttgtcattgaagcata 45401022  T
Q  213 aaaataaacatgag---ataaatatttttcattgataaatagaaaggnnnnnnnnncaagggataaatatttgtcattggtacgtaaaataacacaaggc 309  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  45401023 aaaataaacatgagataataaatatttttcattgataaatagaaaggaaaaaaaaacaagggataaatatttgtcattggtacgtaaaataacacaaggc 45401122  T
Q  310 tccat 314  Q
    |||||    
T  45401123 tccat 45401127  T

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Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 27362906 - 27362606
Alignment:
Q  13 aaaatacgagacaagtatttgtgacttataaatataaaaatagagggaaagtattttttaaagctacatnnnnnnntgagacacatatttatcggaaagt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  27362906 aaaatacgagacaagtatttgtgacttataaatataaaaatagagggaaagtattttttaaagctacataaaaaaatgagacacatatttatcggaaagt 27362807  T
Q  113 atttttcaaagctacatnnnnnnnntgagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttatcattgaagcata 212  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  27362806 atttttcaaagctacataaaaaaa-tgagacacatatttatcaccaataaatatgaaaaagaaacacgatcataagataaatatttgtcatttaagcata 27362708  T
Q  213 aaaataaacatgagataaatatttttcattgataaatagaaagg-nnnnnnnnncaagggataaatatttgtcattggtacgtaaaataacacaaggctc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||| |||||||||||    
T  27362707 aaaataaacatgagataaatatttttcattgataaatagaaaggaaaaaaaaaacaagggataaatatttgtcattggtacgtaaaat-acacaaggctc 27362609  T
Q  312 cat 314  Q
    |||    
T  27362608 cat 27362606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 8484237 - 8484201
Alignment:
Q  218 aaacatgagataaatatttttcattgataaatagaaa 254  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  8484237 aaacatgagataaatatttgtcattgctaaatagaaa 8484201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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