View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1759_high_3 (Length: 346)
Name: NF1759_high_3
Description: NF1759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1759_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 10561651 - 10561978
Alignment:
| Q |
1 |
gacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattggaattatgcagagaaa |
100 |
Q |
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| T |
10561651 |
gacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattggagttatgcagagaaa |
10561750 |
T |
|
| Q |
101 |
cttgaacatggtcatcttaacttctctgctgcccaatcaacctcgcttctaggccctgtgctcttaattcttaatgctcttgtttggtcactatggttta |
200 |
Q |
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| T |
10561751 |
cttgaacatggtcatcttaacttctctgctgcccaatcaacctcacttctaggccctgtgctcttaattcttaatgctcttgtttggtcactatggttta |
10561850 |
T |
|
| Q |
201 |
tcattcaagtaagcatcatatgcatcatgcattatattagtatcatacaacatttagggtttagggttgagctaagggattaaagatctaaggagttagg |
300 |
Q |
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| T |
10561851 |
tcattcaagtaagcatcatatgcatcatgcattatattaatatcatacaacatttagggtttagggctgagctaagggattaaagagttaaggagttagg |
10561950 |
T |
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| Q |
301 |
tttagggttcgaatcttaacgaggaaaa |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10561951 |
tttagggttcgaatcttaacgaggaaaa |
10561978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 45936298 - 45936516
Alignment:
| Q |
1 |
gacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattggaattatgcagagaaa |
100 |
Q |
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||||||||||||| ||||||||||| || || |||||||||| || | | ||||||||| | |||| ||||||| ||||||||| |||||| |||| | |
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| T |
45936298 |
gacagttctatgtgttggtggagcgatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattggagttatgctgagaga |
45936397 |
T |
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| Q |
101 |
cttgaacatggtcatcttaacttctctgctgcccaatc----aacctcgcttctaggccctgtgctcttaattcttaatgctcttgtttggtcactatgg |
196 |
Q |
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||||| | | | ||||| ||||||||||||||| || | ||||||||||||| | ||||||||||| | ||||||| |||||||||||||| |
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| T |
45936398 |
attgaaggagctggtgataactcctctgctgcccaatctaataatgt-gcttctaggccctattctcttaattctcagtgctcttatttggtcactatgg |
45936496 |
T |
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| Q |
197 |
tttatcattcaagtaagcat |
216 |
Q |
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|| ||||||||||||||||| |
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| T |
45936497 |
ttcatcattcaagtaagcat |
45936516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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