View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1759_high_6 (Length: 250)
Name: NF1759_high_6
Description: NF1759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1759_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 27854706 - 27854557
Alignment:
| Q |
1 |
ttcataatattattacacttatgagtttttcacatatttcaatttataattctcttacacactttagttgttcaaattgacactataatatacgcaaaac |
100 |
Q |
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| T |
27854706 |
ttcataatattattacactg-tgagtttttcacatacttcaatttataattctcttacacactttaattgtttaaattgacactataatatacgtaaagt |
27854608 |
T |
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| Q |
101 |
gacactttaattgttcaatgtataaggtcattctctaaattggcaagcttg |
151 |
Q |
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| T |
27854607 |
gaaactttaattgttcaatatataagatcattccctaaatttgcaagcttg |
27854557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 27846660 - 27846571
Alignment:
| Q |
2 |
tcataatattattacacttatgagtttttcacatatttcaatttataattctcttacacactttagttgttcaaattgacactataatat |
91 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||| |
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| T |
27846660 |
tcataatattattacactcatgagtttttcacatacttcaatttataattctcttacacactttaatttttcaaattaaccctataatat |
27846571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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