View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1759_low_12 (Length: 216)
Name: NF1759_low_12
Description: NF1759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1759_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 53351318 - 53351501
Alignment:
| Q |
18 |
ttttattcaactcatcattcagttccatcttgtcaggaaagggtgacatacgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
117 |
Q |
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| T |
53351318 |
ttttattcaactcatcattcagttccatcttgtcaggaaagggtgacatacgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
53351417 |
T |
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| Q |
118 |
atcgcttcttccaggcaactatcacaaaagaaagaatacaaattaacgatcaagaaaatacaagaacatgtaaagctagatttt |
201 |
Q |
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| T |
53351418 |
atcgcttcttccaggcaactatcacaaaagaaagaatacaaattaacgatcaagaaaatacaataacatgtaaagctagatttt |
53351501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 26033203 - 26033349
Alignment:
| Q |
21 |
tattcaactcatcattcagttccatcttgtcaggaaagggtgacat---acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
117 |
Q |
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|||||| |||||||| ||||||||| |||||||| |||||||||| |||| ||||||||||||||||||| || |||||||| |||||||||||||| |
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| T |
26033203 |
tattcagctcatcatccagttccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtcatt |
26033302 |
T |
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| Q |
118 |
atcgcttcttccaggcaactatcac-aaaagaaagaatacaaattaa |
163 |
Q |
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| T |
26033303 |
atcgcttcttcccggtaactgacacaaaaagaacgaatacaaattaa |
26033349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 38447566 - 38447439
Alignment:
| Q |
22 |
attcaactcatcattcagttccatcttgtcaggaaagggtgacat---acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatta |
118 |
Q |
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|||||||||||||| ||||||||| |||||||| |||||||||| || ||||| | ||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
38447566 |
attcaactcatcatccagttccatgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcatta |
38447467 |
T |
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| Q |
119 |
tcgcttcttccaggcaactatcacaaaa |
146 |
Q |
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||| ||||||||||||||| |||||||| |
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| T |
38447466 |
tcggttcttccaggcaactgtcacaaaa |
38447439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 38181033 - 38180922
Alignment:
| Q |
21 |
tattcaactcatcattcagttccatcttgtcaggaaagggtgacatac---gcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
117 |
Q |
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||||||||| || || | ||||||| ||||| || |||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38181033 |
tattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatt |
38180934 |
T |
|
| Q |
118 |
atcgcttcttcc |
129 |
Q |
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|||||||||||| |
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| T |
38180933 |
atcgcttcttcc |
38180922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 38190098 - 38190209
Alignment:
| Q |
21 |
tattcaactcatcattcagttccatcttgtcaggaaagggtgacatac---gcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
117 |
Q |
| |
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||||||||| || || | ||||||| ||||| || |||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38190098 |
tattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatt |
38190197 |
T |
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| Q |
118 |
atcgcttcttcc |
129 |
Q |
| |
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|||||||||||| |
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| T |
38190198 |
atcgcttcttcc |
38190209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 38208257 - 38208146
Alignment:
| Q |
21 |
tattcaactcatcattcagttccatcttgtcaggaaagggtgacatac---gcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
117 |
Q |
| |
|
||||||||| || || | ||||||| ||||| || |||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38208257 |
tattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatt |
38208158 |
T |
|
| Q |
118 |
atcgcttcttcc |
129 |
Q |
| |
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|||||||||||| |
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| T |
38208157 |
atcgcttcttcc |
38208146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 38217323 - 38217434
Alignment:
| Q |
21 |
tattcaactcatcattcagttccatcttgtcaggaaagggtgacatac---gcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
117 |
Q |
| |
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||||||||| || || | ||||||| ||||| || |||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38217323 |
tattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatt |
38217422 |
T |
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| Q |
118 |
atcgcttcttcc |
129 |
Q |
| |
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|||||||||||| |
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| T |
38217423 |
atcgcttcttcc |
38217434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 38456393 - 38456282
Alignment:
| Q |
21 |
tattcaactcatcattcagttccatcttgtcaggaaagggtgacatac---gcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt |
117 |
Q |
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|
||||||||| || || | ||||||| ||||| || |||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38456393 |
tattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatt |
38456294 |
T |
|
| Q |
118 |
atcgcttcttcc |
129 |
Q |
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|||||||||||| |
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| T |
38456293 |
atcgcttcttcc |
38456282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 38342790 - 38342704
Alignment:
| Q |
78 |
gttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttccaggcaactatcac-aaaagaaagaatacaaattaa |
163 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| || |||| ||||||| ||||||||||||| |
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| T |
38342790 |
gttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttccaggcatctgtcacaaaaagaatgaatacaaattaa |
38342704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 38446983 - 38446897
Alignment:
| Q |
78 |
gttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttccaggcaactatcac-aaaagaaagaatacaaattaa |
163 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| || |||| ||||||| ||||||||||||| |
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| T |
38446983 |
gttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttccaggcatctgtcacaaaaagaatgaatacaaattaa |
38446897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 4121684 - 4121599
Alignment:
| Q |
79 |
ttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttccaggcaactatcacaaa-agaaagaatacaaattaa |
163 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||| ||||||||| |||| ||||||| |||| |||| |||||||| |
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| T |
4121684 |
ttttctttttcttgcattccaaaagttcttgatagcattatctgatcttccaggaaactgtcacaaagagaacgaatgcaaattaa |
4121599 |
T |
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