View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1759_low_13 (Length: 215)
Name: NF1759_low_13
Description: NF1759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1759_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 42893416 - 42893602
Alignment:
| Q |
18 |
agcaatgaatgaaggaaagggcctccttctgcagtttgtgtaattgcaatatttactactccacaaatttccaattcctgcatagttcttgggatttttc |
117 |
Q |
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| T |
42893416 |
agcaatgaatgaaggaaagggcctccttctgcagtttgtgtaattgcaatatttactactccacaaatttccaattcctgcatagttcttgggatttttc |
42893515 |
T |
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| Q |
118 |
caaacaattaatacatttcttggcctcaatttacactcttcttctacccaatattactacttcaattcaattcaattcttctctctc |
204 |
Q |
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| T |
42893516 |
caaacaattaatacatttcttggcctcaatttacactcttcttctacccaatattactacttcaattcaattcaattcttctctctc |
42893602 |
T |
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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 25584653 - 25584580
Alignment:
| Q |
95 |
ctgcatagttcttgggatttttccaaacaattaatacatttcttggcctcaatttacactcttcttctacccaa |
168 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
25584653 |
ctgcatacttcttgggatttttccaaacaattaatacatttcctggccacaatttacactcttcttctacccaa |
25584580 |
T |
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