View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1759_low_7 (Length: 272)

Name: NF1759_low_7
Description: NF1759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1759_low_7
NF1759_low_7
[»] chr5 (1 HSPs)
chr5 (13-272)||(22295776-22296035)
[»] chr1 (2 HSPs)
chr1 (37-268)||(41939904-41940135)
chr1 (72-254)||(21035606-21035788)
[»] chr4 (1 HSPs)
chr4 (72-257)||(39300487-39300672)
[»] chr2 (2 HSPs)
chr2 (72-263)||(41939472-41939663)
chr2 (69-257)||(36259813-36260001)
[»] chr7 (1 HSPs)
chr7 (72-260)||(36569986-36570174)
[»] chr8 (2 HSPs)
chr8 (76-260)||(13516696-13516880)
chr8 (76-260)||(13606229-13606413)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 22295776 - 22296035
Alignment:
Q  13 tcttgatcttcacaactctcgacggtgtgtggagcatgaccatcaccgaaagcacgaacatgatctttaagagatctcttgtgtttgaaatcagatccac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22295776 tcttgatcttcacaactctcgacggtgtgtggagcatgaccatcaccgaaagcacgaacatgatctttaagagatctcttgtgtttgaaatcagatccac 22295875  T
Q  113 agatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaactgcaaatggtttcccacactttctacacccaaatggctttgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22295876 agatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaactgcaaatggtttcccacactttctacacccaaatggctttgc 22295975  T
Q  213 tccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgagtggccttgacct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22295976 tccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgagtggccttgacct 22296035  T

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Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 37 - 268
Target Start/End: Complemental strand, 41940135 - 41939904
Alignment:
Q  37 gtgtgtggagcatgaccatcaccgaaagcacgaacatgatctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccac 136  Q
    ||||| |||||||| |||| ||| || ||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  41940135 gtgtgaggagcatggccattaccaaacgcacgaacatggtcttttagcgatcttttgtgtttgaaatcagaaccacagatacaaaaccaaagcttcccac 41940036  T
Q  137 agtttttctcatgtgttctccagtcacctctaactgcaaatggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgt 236  Q
    | || |||||||| || ||||| || ||||| || |||||||  |||| ||||||||| ||| | ||||  ||  |||| ||||| ||||||||||||||    
T  41940035 aattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgatttccctccgtgctttctcttgtagtgtgt 41939936  T
Q  237 ttgaagtgttctgaaatccttgagtggccttg 268  Q
    |||||| ||||||||||| || ||||| ||||    
T  41939935 ttgaagggttctgaaatctttcagtggtcttg 41939904  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 21035606 - 21035788
Alignment:
Q  72 atgatctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaact 171  Q
    |||||||||||| |||| ||| || || ||||| || ||||| | |||| |||||||||||||||| || |||||||| |||||||| || ||||||||     
T  21035606 atgatctttaagcgatcgcttatgcttaaaatccgaaccacaaagacaataccaaagctttccacaattcttctcatgagttctccaatctcctctaaca 21035705  T
Q  172 gcaaatggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatc 254  Q
    ||||| |  || ||||| |||||||||  ||| |||||    ||||| ||||| || || |||||||||||||||||||||||    
T  21035706 gcaaaagccttaccacattttctacacataaaaggcttaatcccatgtttccttttataatgtgtttgaagtgttctgaaatc 21035788  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 39300672 - 39300487
Alignment:
Q  72 atgatctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaact 171  Q
    |||||| ||||| || ||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||| |||||||| |||||| | |||    
T  39300672 atgatccttaagtgacctcttgtgtttgaaatctgatccacagatacaaagccaacgcttgccacagtttttctcatgagttctccaatcacctttcact 39300573  T
Q  172 gcaaatggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatcctt 257  Q
    || ||||| |||||||| |||| |||    ||||  ||||  ||||||||||||||||||||||| || |||||||||||||||||    
T  39300572 gccaatggcttcccacattttcgacaagtgaatgtttttgaaccatgcttcctcttgtagtgtgtctgcagtgttctgaaatcctt 39300487  T

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Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 72 - 263
Target Start/End: Complemental strand, 41939663 - 41939472
Alignment:
Q  72 atgatctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaact 171  Q
    |||||||||||| ||||| ||||| || ||||| || |||||   |||| ||||||| || |||||||||||||| || ||||||||||||||||| |||    
T  41939663 atgatctttaagtgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtttcccacagtttttctcgtgagttctccagtcacctcttact 41939564  T
Q  172 gcaaatggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgagtgg 263  Q
    ||||||| ||| | |||||||||||||  ||||||||||  ||||||||| |||||||| ||||||||||||||||| ||||| || |||||    
T  41939563 gcaaatgctttgcaacactttctacacataaatggctttattccatgctttctcttgtaatgtgtttgaagtgttctaaaatctttcagtgg 41939472  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 257
Target Start/End: Original strand, 36259813 - 36260001
Alignment:
Q  69 aacatgatctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctcta 168  Q
    ||||||||||||||||||||| |||||||| ||||| || |||||  | ||| |||||| ||||||||||||||| ||||| |||||||| |||||| ||    
T  36259813 aacatgatctttaagagatcttttgtgtttaaaatccgaaccacaagtgcaataccaaaactttccacagtttttttcatgagttctccaatcaccttta 36259912  T
Q  169 actgcaaatggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatcctt 257  Q
    || ||||||| |||   ||| ||||| ||   ||||||||||| ||||||||| || ||||| || ||||| || ||||||||||||||    
T  36259913 acagcaaatgctttagaacattttctgcagataaatggctttgttccatgctttcttttgtaatgagtttggagagttctgaaatcctt 36260001  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 36570174 - 36569986
Alignment:
Q  72 atgatctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaact 171  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||| || || ||||| |||||||| || ||||||||     
T  36570174 atgatctttaagagacctcttgtgtttaaaatcagaaccacagatacaataccaaagctttccacaattcttttcatgagttctccaatctcctctaaca 36570075  T
Q  172 gcaaatggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgag 260  Q
    ||||| |  || |  || |||||||||   ||||||||   |||||| || |||||||| ||||||||||||||||| ||||| |||||    
T  36570074 gcaaaagccttgctgcattttctacacatgaatggcttaattccatgttttctcttgtaatgtgtttgaagtgttctaaaatctttgag 36569986  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 260
Target Start/End: Original strand, 13516696 - 13516880
Alignment:
Q  76 tctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaactgcaa 175  Q
    ||||||||||| || || ||||| ||||| || ||||| | |||| |||| |  |||||||| || ||||||||||||||||| |||||| | |||||||    
T  13516696 tctttaagagaccttttatgtttaaaatctgagccacacaaacaataccatatttttccacaattcttctcatgtgttctccaatcacctttcactgcaa 13516795  T
Q  176 atggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgag 260  Q
    ||| ||| ||||| |||||||||  | | || |||   |||||||| ||||| || ||||||||||| ||||| ||||| |||||    
T  13516796 atgatttgccacattttctacacatataaggttttataccatgctttctcttataatgtgtttgaagagttctaaaatctttgag 13516880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 260
Target Start/End: Original strand, 13606229 - 13606413
Alignment:
Q  76 tctttaagagatctcttgtgtttgaaatcagatccacagatacaaaaccaaagctttccacagtttttctcatgtgttctccagtcacctctaactgcaa 175  Q
    ||||||||||| || || ||||| ||||| || ||||| | |||| |||| |  |||||||| || ||||||||||||||||| |||||| | |||||||    
T  13606229 tctttaagagaccttttatgtttaaaatctgagccacacaaacaataccatatttttccacaattcttctcatgtgttctccaatcacctttcactgcaa 13606328  T
Q  176 atggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagtgtgtttgaagtgttctgaaatccttgag 260  Q
    ||| ||| ||||| |||||||||  | | || |||   |||||||| ||||| || ||||||||||| ||||| ||||| |||||    
T  13606329 atgatttgccacattttctacacatataaggttttataccatgctttctcttataatgtgtttgaagagttctaaaatctttgag 13606413  T

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