View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1759_low_9 (Length: 237)
Name: NF1759_low_9
Description: NF1759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1759_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5433131 - 5432908
Alignment:
| Q |
1 |
agttgtggtgtatgatgcctcggttcaagcagcaatattgagtgttgaaggagacaagaaaattcaagacttgttgttgttagatgttatacctcacagt |
100 |
Q |
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| T |
5433131 |
agttgtggtgtatgatgcctcggttcaagcagcgatattgagtgttgaaggagacaagaaaattcaagacttgttgttgttagatgttatacctcacagt |
5433032 |
T |
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| Q |
101 |
cttggtgttgaaactgatggtggtgtcatgtttgttttgattcgaaagaacacattgatcccga-caaaaaataaagtgttttcgctacagtctctgata |
199 |
Q |
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| T |
5433031 |
cttggtgttgaaactgatggtggtgtcatgtttgttttgattcgaaagaacacattgatcccgaccaaaaaaaaaagtgttttcgctacagtctctgata |
5432932 |
T |
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| Q |
200 |
atcaagatagtgttttgataagtg |
223 |
Q |
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||||| |||||||||||||||||| |
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| T |
5432931 |
atcaaaatagtgttttgataagtg |
5432908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 5446272 - 5446468
Alignment:
| Q |
23 |
gttcaagcagcaatattgagtgttgaaggagacaagaaaattcaagacttgttgttgttagatgttatacctcacagtcttggtgttgaaactgatggtg |
122 |
Q |
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||||||||||||||||||| | |||||||||||||||||| |||||||||| |||| |||||||| ||| |||||||||||||||||| | |||| |
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| T |
5446272 |
gttcaagcagcaatattgaatactgaaggagacaagaaaatcgaagacttgttactgttggatgttatgccttttagtcttggtgttgaaactaaaggtg |
5446371 |
T |
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| Q |
123 |
gtgtcatgtttgttttgattcgaaagaacacattgatcccgac-aaaaaataaagtgttttcgctacagtctctgataatcaagatagtgttttgat |
218 |
Q |
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| T |
5446372 |
gtgtcatgtctgttttgattccaaagaatactatgatccctacgaaaaaggaaaatgtattctctatagcctgtgataatcaagatagtcttttgat |
5446468 |
T |
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