View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17600_low_1 (Length: 569)

Name: NF17600_low_1
Description: NF17600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17600_low_1
NF17600_low_1
[»] chr7 (1 HSPs)
chr7 (18-559)||(1826986-1827527)
[»] chr3 (1 HSPs)
chr3 (110-436)||(7581209-7581543)
[»] chr8 (4 HSPs)
chr8 (189-291)||(34069387-34069489)
chr8 (190-316)||(13280887-13281012)
chr8 (333-429)||(34069289-34069386)
chr8 (401-544)||(13281029-13281177)
[»] scaffold0202 (1 HSPs)
scaffold0202 (105-304)||(8436-8637)
[»] chr4 (7 HSPs)
chr4 (206-395)||(22338407-22338598)
chr4 (333-436)||(1562924-1563029)
chr4 (333-520)||(1030469-1030665)
chr4 (105-144)||(1030883-1030922)
chr4 (245-304)||(1030695-1030753)
chr4 (190-240)||(1562785-1562835)
chr4 (105-141)||(22338610-22338646)
[»] chr6 (1 HSPs)
chr6 (256-499)||(29319141-29319395)
[»] chr5 (7 HSPs)
chr5 (244-305)||(25411747-25411808)
chr5 (190-439)||(11573033-11573282)
chr5 (398-544)||(25411503-25411654)
chr5 (335-440)||(11499785-11499893)
chr5 (335-440)||(11514544-11514652)
chr5 (335-440)||(11529358-11529466)
chr5 (246-294)||(26284672-26284720)
[»] chr1 (1 HSPs)
chr1 (105-249)||(9981202-9981348)
[»] chr2 (2 HSPs)
chr2 (210-292)||(11708563-11708644)
chr2 (105-164)||(11709873-11709932)


Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Original strand, 1826986 - 1827527
Alignment:
Q  18 gatactgatttgcaccaaatagtgaatnnnnnnngcattagactttagaaaattcggaaattaatattttnnnnnnnntttatttagaaaaggagatttt 117  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  1826986 gatactgatttgcaccaaatagtgaataaaaaaagcattagactttagaaaattcggaaattaatattttaaaaaaaatttatttagaaaaggagatttt 1827085  T
Q  118 agaattataatcgtgcacgcgaaagctggtggttattagtttaaaatacagaaacaagcgcgtgaaagcatagtacctttaaattggttttctactaaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1827086 agaattataatcgtgcacgcgaaagctggtggttattagtttaaaatacagaaacaagcgcgtgaaagcacagtacctttaaattggttttctactaaaa 1827185  T
Q  218 attactttttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagcggacaattacaaagttcaatttcta 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1827186 attactctttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagcggacaattacaaagttcaatttcta 1827285  T
Q  318 aaacctcctacataaagtaagcggtatctttaacttaatttttcccgcaaagaaaattatcttggtttaattataaaagcattgttttttgagtatcatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1827286 aaacctcctacataaagtaagcggtatctttaacttaatttttcccgcaaagaaaattatcttggtttaattataaaagcattgttttttgagtatcatc 1827385  T
Q  418 ggtcgacgagaacaacattccggctcctcattgttaatattaaatttattattttatttttacgtgcgaaacaaatagtttttgaattaatcttagataa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1827386 ggtcgacgagaacaacattccggctcctcattgttaatattaaatttattattttatttttacgtgcgaaacaaatagtttttgaattaatcttagataa 1827485  T
Q  518 acaaagaaacaaccgatagcggtacttaagagttggtctgtg 559  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  1827486 acaaagaaacaaccgatagcagtacttaagagttggtttgtg 1827527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 110 - 436
Target Start/End: Complemental strand, 7581543 - 7581209
Alignment:
Q  110 gagattttagaattataatcgtgcacgcgaaagctggtggttattagtttaaaatacagaaac--aagcgcgtgaaagcata--gtacctttaaattggt 205  Q
    |||||||||||||||||||  ||| | |||||||||| |||||| |||||||||| ||| |||  | ||||| ||||    |  |||||||||||||| |    
T  7581543 gagattttagaattataattatgcgcacgaaagctggcggttataagtttaaaatccagtaacggacgcgcgcgaaaatcgacggtacctttaaattgat 7581444  T
Q  206 tttctactaaaaattactttttccaagtatgaattaactattttt--caaaacaggacttcgaagttgtaattcgtaccatgcaaaagcggacaattaca 303  Q
    |||||||||||||||||| ||| |||||| ||||||| |||||||   |||| ||||||||||||||||||||| |||||  | ||||||| ||| ||||    
T  7581443 tttctactaaaaattactattttcaagtaagaattaattattttttcaaaaataggacttcgaagttgtaattcataccacacgaaagcggtcaagtaca 7581344  T
Q  304 aagttcaatttctaaaacctcct-acataaagtaagcggtatctttaacttaa-tttttcccgcaaagaaaattatcttggtttaattataaaagcattg 401  Q
    |  ||| | ||||   ||| | |    || ||| |||||||||||||| |||| | |||||||||||||||||||||||  |||||||||||||| |||     
T  7581343 agattcgacttctggcaccgcgtctgttagagttagcggtatctttaagttaactatttcccgcaaagaaaattatcttattttaattataaaagtattt 7581244  T
Q  402 ttttttgagtatcatcggtcgacgagaacaacatt 436  Q
    ||||  |||||||| |||||||||||||| |||||    
T  7581243 ttttgggagtatcaacggtcgacgagaactacatt 7581209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 34069489 - 34069387
Alignment:
Q  189 agtacctttaaattggttttctactaaaaattactttttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaa 288  Q
    ||||||||||||||||||||||||||||||| ||||||| | |||| ||||| | |||||||||||||||||||||||||||||||||| ||||| ||||    
T  34069489 agtacctttaaattggttttctactaaaaataacttttttcgagtaagaattgattatttttcaaaacaggacttcgaagttgtaattcataccacgcaa 34069390  T
Q  289 aag 291  Q
    |||    
T  34069389 aag 34069387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 13280887 - 13281012
Alignment:
Q  190 gtacctttaaattggttttctactaaaaattactttttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaa 289  Q
    ||||||||||| || ||||||||| |||||||||||| |||| || ||||| | ||||||||||||||||||||||||||| ||||| |||||| |  ||    
T  13280887 gtacctttaaagtgattttctactcaaaattactttt-ccaaataagaattgattatttttcaaaacaggacttcgaagttataatttgtaccacgtgaa 13280985  T
Q  290 agcggacaattacaaagttcaatttct 316  Q
    | ||| ||||||||| |||| ||||||    
T  13280986 atcgggcaattacaaggttcgatttct 13281012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 429
Target Start/End: Complemental strand, 34069386 - 34069289
Alignment:
Q  333 agtaagcggtatctttaacttaat-ttttcccgcaaagaaaattatcttggtttaattataaaagcattgttttttgagtatcatcggtcgacgagaa 429  Q
    ||||| |||||||||||||||||| ||||||||| |||||||| |||| | ||||| || ||||  |||||||| |||||| || |||||||||||||    
T  34069386 agtaatcggtatctttaacttaatcttttcccgcgaagaaaataatctcgttttaagtacaaaaatattgttttgtgagtaacaacggtcgacgagaa 34069289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 544
Target Start/End: Original strand, 13281029 - 13281177
Alignment:
Q  401 gttttttgagtatcatcggtcgacgagaacaacattccggctcctcattgttaatattaaattta-----ttattttatttttacgtgcgaaacaaat-a 494  Q
    ||||| ||||||||| |||||||  ||||| ||||||||||  ||| |||||| ||||||||| |     ||| ||||||||| |||||||||||||| |    
T  13281029 gttttgtgagtatcaacggtcgagaagaactacattccggcctctcgttgttattattaaattaaattcattactttatttttccgtgcgaaacaaatta 13281128  T
Q  495 gtttttgaattaatcttagataaacaaagaaacaaccgatagcggtactt 544  Q
    ||||  || |||  ||||||||||||| ||||| || |||||||||||||    
T  13281129 gtttgaga-ttagccttagataaacaacgaaacgacagatagcggtactt 13281177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 105 - 304
Target Start/End: Original strand, 8436 - 8637
Alignment:
Q  105 aaaaggagattttagaattataatcgtgcacgcgaaagctggtggttattagtttaaaatacagaaacaagcgcgtgaaagc--atagtacctttaaatt 202  Q
    |||| ||||||||| ||| |||| |||||||||||||||||| |||||| |||||||||| | | ||| |||||||||||||  |  |||||||||||||    
T  8436 aaaaagagattttaaaataataaccgtgcacgcgaaagctggcggttataagtttaaaatccggtaactagcgcgtgaaagccaactgtacctttaaatt 8535  T
Q  203 ggttttctactaaaaattact-ttttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagcggacaatta 301  Q
    |||||||||| |||||| ||| |||||| | || ||||| | |||||||  ||| |  ||||| ||||||||||||||||||  |||||| || | ||||    
T  8536 ggttttctacaaaaaatgactattttcccatta-gaattgattatttttttaaataaaacttcaaagttgtaattcgtaccacacaaaagtgggcgatta 8634  T
Q  302 caa 304  Q
    |||    
T  8635 caa 8637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 395
Target Start/End: Complemental strand, 22338598 - 22338407
Alignment:
Q  206 tttctactaaaaattactttttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagcggacaattacaaa 305  Q
    |||||||||||||| || || |||||||| |||| || ||||||||||||||||| |||||||||||||||| |||||  |||| |  |||||||||||     
T  22338598 tttctactaaaaatgaccttgtccaagtaagaatcaattatttttcaaaacaggatttcgaagttgtaattcctaccacacaaaggtagacaattacaag 22338499  T
Q  306 gttcaatttctaaaacctcctac-ataaagtaagcggtatctttaactta-atttttcccgcaaagaaaattatcttggtttaattataaaa 395  Q
    |||||| |||||  ||| | | |  || | ||||| || ||||||||| | |||||| |||||||||||||||||||| ||| ||| |||||    
T  22338498 gttcaacttctagcaccgcgtgcgttagaataagcagtgtctttaactcatattttttccgcaaagaaaattatcttgttttgattgtaaaa 22338407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 436
Target Start/End: Original strand, 1562924 - 1563029
Alignment:
Q  333 agtaagcggtatctttaacttaatt-tttcccgcaaagaaaattatcttggttt-aattataaaagcattgttttttgagtatcatcggtcgacgagaac 430  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||||  ||| ||||||||||| ||||||||   ||||||| ||||||||||||||    
T  1562924 agtaagcgatatctttaatttaattatttcccgcaaagaaaattatcttatttttaattataaaagtattgttttgccagtatcaccggtcgacgagaac 1563023  T
Q  431 aacatt 436  Q
     |||||    
T  1563024 tacatt 1563029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 520
Target Start/End: Complemental strand, 1030665 - 1030469
Alignment:
Q  333 agtaagcggtatctttaacttaatt-tttcccgcaaagaaaattatcttggtttaattataaaagcattgttttttgagtat---catcggtcgacgaga 428  Q
    ||||||||  |||||||| |||||| ||||||||||| |||||||| ||| |||||||||||||| ||| |||| |||||||   || ||||| ||||||    
T  1030665 agtaagcgacatctttaatttaattatttcccgcaaataaaattattttgttttaattataaaagtattattttgtgagtatcaacaacggtcaacgaga 1030566  T
Q  429 acaacattccggctcctcattgtta-----atattaaatttattattttatttttacgtgcgaaacaaatagtttttgaattaatcttagataaaca 520  Q
    || ||||||| |   ||| ||||||     | ||||| || ||||||||||||||||| ||||||||||| |||||   ||||  ||||||||||||    
T  1030565 actacattccagtctctcgttgttataattaaattaatttcattattttatttttacgcgcgaaacaaattgttttgagattagccttagataaaca 1030469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 1030922 - 1030883
Alignment:
Q  105 aaaaggagattttagaattataatcgtgcacgcgaaagct 144  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  1030922 aaaaagagattttagaattataatcgtgcacgcgaaagct 1030883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 1030753 - 1030695
Alignment:
Q  245 atttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagcggacaattacaa 304  Q
    |||||||||||| | |||||||||||||||||||||||| || ||||||  |||||||||    
T  1030753 atttttcaaaac-gtacttcgaagttgtaattcgtaccacgcgaaagcgcgcaattacaa 1030695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 1562785 - 1562835
Alignment:
Q  190 gtacctttaaattggttttctactaaaaattactttttccaagtatgaatt 240  Q
    |||||||||||||| ||||||||||||||| || |||||| |||| |||||    
T  1562785 gtacctttaaattgattttctactaaaaatgaccttttccgagtaagaatt 1562835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 22338646 - 22338610
Alignment:
Q  105 aaaaggagattttagaattataatcgtgcacgcgaaa 141  Q
    |||| |||||||||||||||||||||| |||||||||    
T  22338646 aaaaagagattttagaattataatcgtacacgcgaaa 22338610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 256 - 499
Target Start/End: Original strand, 29319141 - 29319395
Alignment:
Q  256 caggacttcgaagttgtaattcgtaccatgcaaaagcggacaattacaaagttcaatttctaaaacctcctacataa-agtaagcggtatcttt-aactt 353  Q
    |||||| || |||||||||| ||||||| || |||||||   ||||||| |||  |||||||| | | | ||||| | ||||||| |||||||| |||||    
T  29319141 caggacatcaaagttgtaatccgtaccacgcgaaagcgggttattacaaggtttgatttctaacaacgcatacattagagtaagcagtatcttttaactt 29319240  T
Q  354 aatttttc-ccgcaaagaaaattatcttggtttaattataaaagcattgttttttgagtatc---atcggtcgacgagaacaacattccggctcctcatt 449  Q
     ||||||  |||| ||||||||||||||  |||||||||||||| |||||||| ||||||||   |  |||||| |||||| |||||||| |  ||| ||    
T  29319241 tatttttttccgcgaagaaaattatcttcttttaattataaaagtattgttttgtgagtatcaaaaaaggtcgatgagaactacattccgacctctcgtt 29319340  T
Q  450 gtta-----atattaaatttattattttatttttacgtgcgaaacaaatagtttt 499  Q
    ||||     | |||||||| ||||||||| ||||| ||||||||||||| |||||    
T  29319341 gttattattaaattaaattcattattttagttttatgtgcgaaacaaattgtttt 29319395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 25411808 - 25411747
Alignment:
Q  244 tatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagcggacaattacaaa 305  Q
    |||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||    
T  25411808 tatttttcaaaacaggacttcgaagttgaaattcgtaccgcgcgaaagcggacaattacaaa 25411747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 439
Target Start/End: Complemental strand, 11573282 - 11573033
Alignment:
Q  190 gtacctttaaattggttttctactaaaaattactttttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaa 289  Q
    ||||||||||||| | ||||| |||||||| ||||||| | |||| ||||| | |||||||| ||| |||||||| |||||||||||| || || |||||    
T  11573282 gtacctttaaattagctttctgctaaaaatgacttttttcgagtaagaattgattatttttc-aaataggacttc-aagttgtaattcataacacgcaaa 11573185  T
Q  290 agcggacaattacaaagttcaatttctaaaacctcct-acataaagtaagcggtatctttaacttaat-ttttcccgcaaagaaaattatcttggtttaa 387  Q
    ||||  ||||||||| |||  |  |||   ||| | |    || ||||||||||||||||| | |||| ||| ||||| |||||||| |||||| |||||    
T  11573184 agcgagcaattacaaggtttgacctctggcaccgcatgtgttagagtaagcggtatctttaccataatctttccccgcgaagaaaataatcttgttttaa 11573085  T
Q  388 ttataaaagcattgttttttgagtatcatcggtcgacgagaacaacattccg 439  Q
    ||||||||  | | |||| | |||| || |||||||||||||  ||||||||    
T  11573084 ttataaaaataattttttgtaagtagcaacggtcgacgagaattacattccg 11573033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 544
Target Start/End: Complemental strand, 25411654 - 25411503
Alignment:
Q  398 attgttttttgagtatcatcggtcgacgagaacaacattccggctcctcattgttaatattaaattta-----ttattttatttttacgtgcgaaacaaa 492  Q
    |||||||| ||||||||| |||||||||||||| || || || |  ||||||||||  |||||||| |     |||||||||||||| | | |||| |||    
T  25411654 attgttttgtgagtatcaacggtcgacgagaactacttttcgacatctcattgttatcattaaattaaaatcattattttatttttaggcgtgaaagaaa 25411555  T
Q  493 tagtttttgaattaatcttagataaacaaagaaacaaccgatagcggtactt 544  Q
    | |||||   ||||| |||||||||||||| |||| || ||||| |||||||    
T  25411554 ttgttttgagattaaccttagataaacaaacaaacgacagatagtggtactt 25411503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 11499893 - 11499785
Alignment:
Q  335 taagcggtatctttaacttaat-ttttccc--gcaaagaaaattatcttggtttaattataaaagcattgttttttgagtatcatcggtcgacgagaaca 431  Q
    ||||||||||||||| | |||| |||||||  || |||||||| |||||| |||||||||| ||  | | |||| | ||||||| |||||||||||||      
T  11499893 taagcggtatctttaccataatcttttcccacgcgaagaaaataatcttgttttaattatataaataattttttgtaagtatcagcggtcgacgagaatt 11499794  T
Q  432 acattccgg 440  Q
    |||||||||    
T  11499793 acattccgg 11499785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 11514652 - 11514544
Alignment:
Q  335 taagcggtatctttaacttaat-ttttccc--gcaaagaaaattatcttggtttaattataaaagcattgttttttgagtatcatcggtcgacgagaaca 431  Q
    ||||||||||||||| | |||| |||||||  || |||||||| |||||| |||||||||| ||  | | |||| | ||||||| |||||||||||||      
T  11514652 taagcggtatctttaccataatcttttcccacgcgaagaaaataatcttgttttaattatataaataattttttgtaagtatcagcggtcgacgagaatt 11514553  T
Q  432 acattccgg 440  Q
    |||||||||    
T  11514552 acattccgg 11514544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 11529466 - 11529358
Alignment:
Q  335 taagcggtatctttaacttaat-ttttccc--gcaaagaaaattatcttggtttaattataaaagcattgttttttgagtatcatcggtcgacgagaaca 431  Q
    ||||||||||||||| | |||| |||||||  || |||||||| |||||| |||||||||| ||  | | |||| | ||||||| |||||||||||||      
T  11529466 taagcggtatctttaccataatcttttcccacgcgaagaaaataatcttgttttaattatataaataattttttgtaagtatcagcggtcgacgagaatt 11529367  T
Q  432 acattccgg 440  Q
    |||||||||    
T  11529366 acattccgg 11529358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 26284720 - 26284672
Alignment:
Q  246 tttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagcgg 294  Q
    |||||||||||||| |||||||| ||||||| |||||| || |||||||    
T  26284720 tttttcaaaacagggcttcgaagctgtaatttgtaccacgcgaaagcgg 26284672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 249
Target Start/End: Original strand, 9981202 - 9981348
Alignment:
Q  105 aaaaggagattttagaattataatcgtgcacgcgaaagctggtggttattagtttaaaatacagaaacaagcgcgtgaaagc--atagtacctttaaatt 202  Q
    |||| ||||||||| ||||||||||| | | |||||||||||| |||||||||||||||| | | ||| | ||||  |||||  |   |||||||| |||    
T  9981202 aaaaagagattttaaaattataatcgggtatgcgaaagctggtagttattagtttaaaatccggtaacgaacgcgcaaaagccaacgttacctttatatt 9981301  T
Q  203 ggttttctactaaaaattactttttccaagtatgaattaactatttt 249  Q
     |||||||||||||||| ||||||||  |||| ||||| | ||||||    
T  9981302 agttttctactaaaaatgactttttctgagtaagaattgattatttt 9981348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 11708644 - 11708563
Alignment:
Q  210 tactaaaaattactttttccaagtatgaattaactatttttcaaaacaggacttcgaagttgtaattcgtaccatgcaaaagc 292  Q
    |||||||||| |||||||||||||| ||| | | |||||||| ||| ||||||| |||| |||||||||||||| ||||||||    
T  11708644 tactaaaaatgactttttccaagtaagaactgattatttttc-aaataggactttgaagatgtaattcgtaccacgcaaaagc 11708563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 11709932 - 11709873
Alignment:
Q  105 aaaaggagattttagaattataatcgtgcacgcgaaagctggtggttattagtttaaaat 164  Q
    |||||| |||||| ||||||||||||||||| | |||||||||| |||| ||||||||||    
T  11709932 aaaaggggatttttgaattataatcgtgcacacaaaagctggtgattataagtttaaaat 11709873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University