View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17600_low_2 (Length: 498)
Name: NF17600_low_2
Description: NF17600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17600_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 55 - 489
Target Start/End: Complemental strand, 3304683 - 3304248
Alignment:
| Q |
55 |
tatttcacattcaataagacttttagtacaatatgtacggatcatttgttcattgttcttgcgcaacaagaaaattttcatgaaaacgtcattgtgttaa |
154 |
Q |
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| T |
3304683 |
tatttcacattcaatcagacttttagtacaatatgtacggatcatttgttcattgttcttgcgcaacaagaaaattttcatgaaaacgtcattgtgttaa |
3304584 |
T |
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| Q |
155 |
gccgtagaagacatcaaatctataagaatggattttgcagtattttcacaaataattttt-ctgtattttaacaaatatatgtaatagtggtacattggt |
253 |
Q |
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| T |
3304583 |
gccatagaagacatcaaatctataagaatggattttgcagtattttaacaaataattttttctgtattttaacaaatatatgtaatagtggtacattggt |
3304484 |
T |
|
| Q |
254 |
atagaaatgagaaaatttaactcagcattcagatagaaaggagattctcccgcttctttaattattagtttttcttgaatggtcttagaaagaggtaact |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3304483 |
atagaaatgagaaaatttaactcagcattcagatagaaagtagattctcccgcttctttaattattagtttttcttgaatggtcttagaaagaggtaact |
3304384 |
T |
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| Q |
354 |
tattgttttccaatttccactatttcaattttacagtctcagttttagaactgattttttcccattctctacttacatatacctctactgaaaatggttg |
453 |
Q |
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| T |
3304383 |
tattgttttccaatttccactaattcaattttacggtctcagttttagaactgattttttcccattctctacttacatatacctctactgaaaatggttg |
3304284 |
T |
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| Q |
454 |
atggaagatgggacagccatctacataggcctttgc |
489 |
Q |
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| T |
3304283 |
atggaagatgggacagccatctacataggcctttgc |
3304248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 258 - 432
Target Start/End: Complemental strand, 3292582 - 3292410
Alignment:
| Q |
258 |
aaatgagaaaatttaactcagcattcagatagaaaggagattctcccgcttc---tttaattattagtttttcttgaatggtcttagaaagaggtaactt |
354 |
Q |
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|||||||||||||||| || |||||||||||||||| |||||| || |||| ||||||||||| |||| ||| |||||||||||| |||||||| || |
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| T |
3292582 |
aaatgagaaaatttaagtctacattcagatagaaaggggattctgccacttcgtctttaattattacttttccttcaatggtcttagacagaggtaaatt |
3292483 |
T |
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| Q |
355 |
attgttttccaatttccactatttcaattttacagtctcagttttagaactgattttt-tcccattctctacttacata |
432 |
Q |
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| T |
3292482 |
attgttttccaatttctaat------aacttacagtcttagttttagaactgatttttgtcccattctctagttacata |
3292410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 3293013 - 3292973
Alignment:
| Q |
55 |
tatttcacattcaataagacttttagtacaatatgtacgga |
95 |
Q |
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| T |
3293013 |
tatttcacattcaatcagatttttagtacaatatgtacgga |
3292973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42535323 - 42535261
Alignment:
| Q |
1 |
ttgaatatactatcttgaggagagcaggagaggaccttggcatggacatcatcatatttcaca |
63 |
Q |
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||||||||||||||||| | |||| ||| ||||||||||||| ||||||||| |||||||| |
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| T |
42535323 |
ttgaatatactatcttgcgcagagtaggttaggaccttggcattaacatcatcaaatttcaca |
42535261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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