View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17600_low_4 (Length: 449)
Name: NF17600_low_4
Description: NF17600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17600_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 29192014 - 29191590
Alignment:
| Q |
15 |
aatcaccaccctgcatttataaacatnnnnnnntatcagtaatataacatcataaaaccggtagaaggaaatgtgaatcgagcgacaatagtatacctta |
114 |
Q |
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| T |
29192014 |
aatcaccaccctgcatttataaacataaaaaaatatcagtaatataacatcataaaaccggtagaaggaaatgtgaatcgagcgacaatagtatacctta |
29191915 |
T |
|
| Q |
115 |
tttttcatgccaccctccatcgtataagttttaccagtcccagtctgtccataagcaaagacagtacagttgaaaccatcgagaacttcattgacaatcg |
214 |
Q |
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| T |
29191914 |
tttttcatgccaccctccatcgtataagttttaccagtcccagtctgtccataagcaaagacagtacagttgaaaccatcgagaacttcattgacaatcg |
29191815 |
T |
|
| Q |
215 |
gggcaattgcttggtcgtaaatcgatctctgttgtgatttcggtccaaaaaccttgccaaacagattcaaaaacaattgttaatcagttattacagtata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29191814 |
gggcaattgcttggtcgtaaatcgatctctgttgtgatttcggtccaaaaaccttgccaaacagattcaaaaacaattgttaatcaattattacagtata |
29191715 |
T |
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| Q |
315 |
ttgttatgatcaccatatcatagtaagatagctttaaaaaagatataccttgtcaaaattgaaaactttctccacttgtttgttggctatagtatgcata |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29191714 |
ttgttatgatcaccatatcatagtaagatagctttaaaaaagatataccttgtcaaaattgaaaactttctccacttgtttgttggctatagtatgcata |
29191615 |
T |
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| Q |
415 |
acagtcacttcccttttattttcat |
439 |
Q |
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| T |
29191614 |
acagtcacttcccttttattttcat |
29191590 |
T |
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