View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17600_low_7 (Length: 318)

Name: NF17600_low_7
Description: NF17600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17600_low_7
NF17600_low_7
[»] chr3 (10 HSPs)
chr3 (15-300)||(53040418-53040705)
chr3 (189-256)||(4824659-4824726)
chr3 (163-285)||(54290795-54290919)
chr3 (162-226)||(43803992-43804058)
chr3 (195-256)||(2831540-2831601)
chr3 (164-238)||(51039766-51039842)
chr3 (213-281)||(23554743-23554811)
chr3 (185-246)||(36494178-36494240)
chr3 (190-235)||(16731049-16731094)
chr3 (189-254)||(52299037-52299102)
[»] chr4 (19 HSPs)
chr4 (162-281)||(2063444-2063564)
chr4 (164-280)||(24546727-24546844)
chr4 (184-254)||(28695761-28695831)
chr4 (184-282)||(49532292-49532389)
chr4 (189-282)||(23016268-23016361)
chr4 (190-242)||(48097959-48098011)
chr4 (164-236)||(52014584-52014658)
chr4 (189-279)||(53737840-53737930)
chr4 (189-237)||(39279204-39279252)
chr4 (191-254)||(30978696-30978759)
chr4 (164-246)||(41317210-41317293)
chr4 (189-256)||(46088562-46088629)
chr4 (184-254)||(20180264-20180334)
chr4 (166-256)||(42956992-42957085)
chr4 (184-253)||(2818355-2818424)
chr4 (189-254)||(48079311-48079375)
chr4 (164-255)||(23938506-23938600)
chr4 (189-253)||(33266866-33266930)
chr4 (164-237)||(41370187-41370262)
[»] chr8 (18 HSPs)
chr8 (165-256)||(37564352-37564445)
chr8 (164-281)||(39691133-39691252)
chr8 (162-282)||(31264964-31265086)
chr8 (189-254)||(34336519-34336584)
chr8 (162-242)||(29487076-29487159)
chr8 (164-255)||(1502689-1502783)
chr8 (164-256)||(25279922-25280015)
chr8 (190-253)||(42022640-42022703)
chr8 (190-242)||(15352117-15352169)
chr8 (189-280)||(25163068-25163157)
chr8 (190-284)||(20279602-20279696)
chr8 (190-284)||(21066229-21066323)
chr8 (190-256)||(43429682-43429748)
chr8 (164-237)||(11727919-11727993)
chr8 (164-253)||(12787844-12787935)
chr8 (164-257)||(33285944-33286039)
chr8 (189-245)||(41106044-41106100)
chr8 (189-256)||(44042530-44042597)
[»] chr2 (21 HSPs)
chr2 (162-282)||(18684327-18684451)
chr2 (165-246)||(9153494-9153577)
chr2 (162-254)||(13538391-13538485)
chr2 (166-242)||(8964399-8964477)
chr2 (204-282)||(8773734-8773812)
chr2 (164-239)||(32859795-32859872)
chr2 (189-281)||(41543945-41544038)
chr2 (164-281)||(13197219-13197337)
chr2 (212-282)||(8789823-8789893)
chr2 (212-281)||(27921858-27921927)
chr2 (184-238)||(33839956-33840011)
chr2 (162-254)||(44195502-44195596)
chr2 (189-232)||(44330675-44330718)
chr2 (189-232)||(44365449-44365492)
chr2 (189-287)||(2826002-2826100)
chr2 (190-256)||(14663227-14663293)
chr2 (184-254)||(27501776-27501846)
chr2 (166-255)||(33275915-33276005)
chr2 (164-226)||(40347966-40348030)
chr2 (189-253)||(18375058-18375122)
chr2 (165-254)||(20064906-20064997)
[»] chr5 (18 HSPs)
chr5 (162-282)||(25437891-25438014)
chr5 (185-242)||(26663642-26663699)
chr5 (185-242)||(26935237-26935294)
chr5 (189-285)||(591270-591366)
chr5 (162-237)||(967114-967191)
chr5 (162-237)||(24041040-24041117)
chr5 (185-254)||(8761922-8761991)
chr5 (193-281)||(8247035-8247123)
chr5 (189-253)||(14042459-14042523)
chr5 (194-285)||(34032141-34032232)
chr5 (184-242)||(28307159-28307216)
chr5 (164-283)||(41583509-41583630)
chr5 (164-238)||(14309106-14309182)
chr5 (164-245)||(11010248-11010331)
chr5 (184-228)||(31759037-31759081)
chr5 (190-242)||(33590061-33590113)
chr5 (164-237)||(33639759-33639834)
chr5 (190-234)||(35195199-35195243)
[»] chr7 (18 HSPs)
chr7 (162-251)||(34681690-34681781)
chr7 (190-256)||(6388000-6388066)
chr7 (166-280)||(36061523-36061638)
chr7 (162-239)||(35599819-35599898)
chr7 (172-254)||(27338257-27338341)
chr7 (204-284)||(8169996-8170076)
chr7 (164-256)||(44452060-44452155)
chr7 (191-254)||(17883361-17883424)
chr7 (162-254)||(18926322-18926416)
chr7 (165-256)||(34398095-34398188)
chr7 (164-254)||(36973331-36973424)
chr7 (204-281)||(18219146-18219222)
chr7 (189-242)||(33922786-33922839)
chr7 (170-256)||(37352436-37352524)
chr7 (185-253)||(41431132-41431201)
chr7 (185-254)||(47507605-47507674)
chr7 (190-254)||(26402829-26402893)
chr7 (189-229)||(26804065-26804105)
[»] chr1 (12 HSPs)
chr1 (195-283)||(39912262-39912350)
chr1 (164-239)||(5250920-5250997)
chr1 (189-251)||(24607416-24607477)
chr1 (168-254)||(6983013-6983101)
chr1 (190-254)||(34861259-34861323)
chr1 (164-257)||(44584069-44584164)
chr1 (195-246)||(6285849-6285900)
chr1 (189-283)||(43492174-43492269)
chr1 (195-257)||(25095601-25095663)
chr1 (164-254)||(5115625-5115717)
chr1 (213-278)||(35259116-35259181)
chr1 (189-278)||(35508361-35508450)
[»] chr6 (5 HSPs)
chr6 (168-254)||(12132522-12132610)
chr6 (189-232)||(22020567-22020610)
chr6 (189-232)||(22055064-22055107)
chr6 (185-254)||(24797408-24797477)
chr6 (189-254)||(29407998-29408063)
[»] scaffold0425 (1 HSPs)
scaffold0425 (195-246)||(2762-2814)
[»] scaffold0011 (1 HSPs)
scaffold0011 (184-256)||(219183-219255)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 53040705 - 53040418
Alignment:
Q  15 tatagaaaatccgccgaggctgtaatgtgtggccttcttccagactctccaacagccacaaaaagcagaactgatagtaatgttctccttgaatgctatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53040705 tatagaaaatccgccgaggctgtaatgtgtggccttcttccagactctccaacagccacaaaaagcagaactgatagtaatgttctccttgaatgctatc 53040606  T
Q  115 tgacttgatattaactaatgggaaatgctaatgagtgcccccggggcactttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaat 212  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  53040605 tgacttgatattaactaatgggaaatgctaatgactgcccccagggcactttttatgaaagtttgtgtattcaatacattggaaattgaagtatttgaat 53040506  T
Q  213 tttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagacccttaacttataatctgatta 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53040505 tttttaaataataatttcttaatttagaatccttaaagagtgtcacgagagtactcgttagcaagacccttaacttataatctgatta 53040418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 4824659 - 4824726
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||| |||||||||||||| |||||||||  |||||||||||||||||||||||||| |||||||||    
T  4824659 cattgaaaattgaagtatttaaattttttagttaataatttcttaatttagaatccttaaagagtgtc 4824726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 54290795 - 54290919
Alignment:
Q  163 ctttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacga 260  Q
    ||||||||||||| ||||||||  |||||||||||||||||| | ||||| ||||||||| ||||| ||| |||||||  || ||| ||||||| | ||     
T  54290795 ctttttatgaaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttatcatgcttaaagagtgccccgg 54290894  T
Q  261 gagtactcgttagcaagacccttaa 285  Q
    |  ||||||||| ||||||||||||    
T  54290895 ggatactcgttaacaagacccttaa 54290919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 43804058 - 43803992
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataa 226  Q
    |||||||||||||| ||||||||  |||||||||||||||||| | ||||| ||||||||| |||||    
T  43804058 actttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataa 43803992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 2831601 - 2831540
Alignment:
Q  195 aaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    |||||||| ||||||| ||| ||||| ||||||||||| |||| |||||||| |||||||||    
T  2831601 aaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtc 2831540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 51039842 - 51039766
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaattta 238  Q
    ||||||||||||||| |||||  ||| ||||| |||||||| ||||||| ||||||| | |||||||| ||||||||    
T  51039842 tttttatgaaaatttatgtattcaattcattgaaaattgaactatttgacttttttatagaataattttttaattta 51039766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 23554743 - 23554811
Alignment:
Q  213 tttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccc 281  Q
    |||||||| ||||||||||| ||| ||||||||| ||||||||| || | | ||||||||||| |||||    
T  23554743 tttttaaaaaataatttctttattaagaatccttaaagagtgtcccgggggcactcgttagcaggaccc 23554811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 36494240 - 36494178
Alignment:
Q  185 aatacattggaaattgaagtatttgaattttttaaat-aataatttcttaatttagaatcctt 246  Q
    ||||||||||||||||||||||| || |||||| ||| |||| ||||||||||  ||||||||    
T  36494240 aatacattggaaattgaagtattagatttttttcaatgaatagtttcttaattgggaatcctt 36494178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 16731094 - 16731049
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaat 235  Q
    |||| |||||||| ||||||||||||||||  ||||||||||||||    
T  16731094 attgtaaattgaaatatttgaattttttaagaaataatttcttaat 16731049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 52299102 - 52299037
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||| ||| ||||| ||||||||  ||||||||||| |||  |||||||| |||||||    
T  52299102 cattggaaattggagtttttgacttttttaaggaataatttctttattaggaatccttaaagagtg 52299037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 2063564 - 2063444
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacg 259  Q
    |||||||||||||||||||||||  |||||||||||||||||| | ||||| ||||||||| ||||| ||| |||||||| || ||| ||||||||| ||    
T  2063564 actttttatgaaaatttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgtc-cg 2063466  T
Q  260 agagtactcgttagcaagaccc 281  Q
     ||| |||||||| ||||||||    
T  2063465 ggagcactcgttaacaagaccc 2063444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 24546727 - 24546844
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgag 261  Q
    |||||||||||||||||||||  |||||||||||||||||| |  |||||||||||||| ||||||||| |||||||  || ||| ||||||||  | ||    
T  24546727 tttttatgaaaatttgtgtatttaatacattggaaattgaactgcttgaattttttaaagaataatttcctaatttaacatgcttaaagagtgt-tctag 24546825  T
Q  262 agtactcgttagcaagacc 280  Q
    || |||||||| |||||||    
T  24546826 agcactcgttaacaagacc 24546844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 28695831 - 28695761
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||   ||||||| |||||||    
T  28695831 taatacattggaaattgaagtttttgacttttttaaaaaataatttctttattagtaatccttaaagagtg 28695761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 49532292 - 49532389
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccct 282  Q
    |||| |||||||||||||| ||||||| |||| |||| |||||||||||||||| |||| |||  |||||||| || | | |||||||| |||||||||    
T  49532292 taatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgcttacagagtgtcccgggggcactcgttaacaagaccct 49532389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 23016268 - 23016361
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccct 282  Q
    |||||||||||||| | ||||| || ||||||||||||||||||||||| |||| ||  ||||||| | || | |  |||||||||||||||||    
T  23016268 cattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaatgctcaaagagtgccccgggggcgctcgttagcaagaccct 23016361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 48098011 - 48097959
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    ||||||||||||| ||||| | ||||||||| |||||||||||||||||||||    
T  48098011 attggaaattgaactatttaacttttttaaagaataatttcttaatttagaat 48097959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 52014658 - 52014584
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatt 236  Q
    |||||||||||||||||||||  ||| |||||||||||| | ||||||| ||||||||  ||||||||| |||||    
T  52014658 tttttatgaaaatttgtgtatctaatgcattggaaattggattatttgacttttttaatgaataatttcctaatt 52014584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 53737840 - 53737930
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagac 279  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||| ||| |||  ||| ||||||| |  | | | |||||||||||||||    
T  53737840 cattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccctgggggcactcgttagcaagac 53737930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 39279252 - 39279204
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaattt 237  Q
    ||||||||||||||| |||||| ||||||||  ||||||||||||||||    
T  39279252 cattggaaattgaagaatttgacttttttaaggaataatttcttaattt 39279204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 30978696 - 30978759
Alignment:
Q  191 ttggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||| ||||||| ||||||||  ||| |||||||||||| |||| ||| |||||||    
T  30978696 ttggaaattgaactatttgacttttttaataaatcatttcttaatttggaatgcttaaagagtg 30978759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 41317293 - 41317210
Alignment:
Q  164 tttttatgaaaatttgtgta-taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatcctt 246  Q
    |||||||||||||||||||| | |  |||| || |||||  ||||||| ||||||||  |||||||| ||||||||||||||||    
T  41317293 tttttatgaaaatttgtgtactcaagcattagacattgacatatttgatttttttaaggaataattttttaatttagaatcctt 41317210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 46088562 - 46088629
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    |||||||||||||||| ||||| ||||||||  ||||||||||| |||  |||| ||| |||||||||    
T  46088562 cattggaaattgaagtttttgatttttttaaggaataatttctttattaggaattcttaaagagtgtc 46088629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 20180264 - 20180334
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||| ||||| |||||| ||| ||||| |||||||||||||||||| || ||| ||||| ||| |||||||    
T  20180264 taatgcattgaaaattggagtttttgacttttttaaataataatttatttattaagaattcttaaagagtg 20180334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 42956992 - 42957085
Alignment:
Q  166 tttatgaaaatttgtgta--taatacattggaaattgaagtatttgaatttttt-aaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||| ||||| ||||||  |||| |||||||||||||| ||||||| |||||| ||||||||| | |||| ||||||||  || |||||||||    
T  42956992 tttataaaaatgtgtgtaattaatgcattggaaattgaaatatttgatttttttaaaataataactgcttattttagaatgtttaaagagtgtc 42957085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 2818424 - 2818355
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagt 253  Q
    |||| |||||||||||||| | |||||  |||| ||| ||||||||||||||||| ||| ||| ||||||    
T  2818424 taatgcattggaaattgaactttttgaccttttaaaagaataatttcttaatttaaaatgcttaaagagt 2818355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 48079311 - 48079375
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||| ||| ||| ||||||||||| ||||||||||| |||  |||||||| |||||||    
T  48079311 cattggaaattggagttttt-aattttttaaagaataatttctttattatgaatccttaaagagtg 48079375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 23938600 - 23938506
Alignment:
Q  164 tttttatgaaaatttgtgtat---aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgt 255  Q
    |||||||||||| ||||||||   ||| |||| ||||||| || ||||||||||  |||  ||||||||| |||||||||  |||| ||||||||    
T  23938600 tttttatgaaaaattgtgtattcgaatgcatttgaaattgtagcatttgaatttactaaggaataatttcataatttagatgccttaaagagtgt 23938506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 33266866 - 33266930
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagt 253  Q
    ||||||||||| |||| ||||| ||||||||| ||||||||||| ||| | |||| || ||||||    
T  33266866 cattggaaattaaagtttttgacttttttaaagaataatttctttattaaaaatctttaaagagt 33266930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 41370187 - 41370262
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaattt 237  Q
    ||||||||||||||||||||   ||| ||||| |||||||| ||||| | |||||| |  ||||||||||||||||    
T  41370187 tttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgagaaataatttcttaattt 41370262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 37564352 - 37564445
Alignment:
Q  165 ttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||||||||| ||||||||  |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| ||  || |||||||||    
T  37564352 ttttatgaaaacttgtgtatttaatacattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtc 37564445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 39691133 - 39691252
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgag 261  Q
    |||||||||||||||||||||  ||| ||||| |||||||| ||||||| ||||||||| |||||||| ||||| | |||| ||| ||||||||| ||||    
T  39691133 tttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaagagtgtctcgag 39691232  T
Q  262 agtactcgttagcaagaccc 281  Q
     | |||||||| ||| ||||    
T  39691233 ggcactcgttaacaaaaccc 39691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 31265086 - 31264964
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacg 259  Q
    |||||||||||||| ||||||||  |||||||||||||||||| | ||||| ||||||||| ||||| ||| |||||||| || ||| ||||||| |||     
T  31265086 actttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgccaca 31264987  T
Q  260 agagtactcgttagcaagaccct 282  Q
     | | |||||||| |||||||||    
T  31264986 ggggcactcgttaacaagaccct 31264964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 34336519 - 34336584
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||| |||||||    
T  34336519 cattggaaattgaagtttttgacttttttaaagaataatttctttattaagaatccttaaagagtg 34336584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 29487076 - 29487159
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaa-ttttttaaataataatttcttaatttagaat 242  Q
    ||||||||| ||||| |||||||  ||| ||||| |||||||| ||||| || ||||||||| |||||||||||||||||||||    
T  29487076 actttttataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataatttcttaatttagaat 29487159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 1502689 - 1502783
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaatttttt-aaataataatttcttaatttagaatccttgaagagtgt 255  Q
    |||||||||||||||| ||||  ||| ||||| |||||||| | |||||||||||| ||| ||||||||| |||||||||||  || ||||||||    
T  1502689 tttttatgaaaatttgcgtatttaatgcattgaaaattgaactgtttgaatttttttaaagaataatttcctaatttagaatgtttaaagagtgt 1502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 25280015 - 25279922
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    |||||||||||| || |||||  |||||||||||||||||| |||||| | |||||||| ||||| ||| |||||||| || ||| |||||||||    
T  25280015 tttttatgaaaacttatgtatttaatacattggaaattgaattatttg-actttttaaagaataacttcctaatttagcatgcttaaagagtgtc 25279922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 42022640 - 42022703
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagt 253  Q
    ||||||||||||| ||||||| ||||||||| |||||||| |||||||| ||| ||| ||||||    
T  42022640 attggaaattgaactatttgacttttttaaaaaataattttttaatttaaaatgcttaaagagt 42022703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 15352117 - 15352169
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    ||||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  15352117 attggaaattgaactatttgacttttttacagaataattttttaatttagaat 15352169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 25163068 - 25163157
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagacc 280  Q
    |||||||||||||| ||||||| |||||  || |||||||| ||||||| |||| ||| |||||||   |||| ||||||||||||||||||    
T  25163068 cattggaaattgaaatatttgactttttctaagaataattttttaattttgaatacttaaagagtg-atcgag-gtactcgttagcaagacc 25163157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 20279602 - 20279696
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccctta 284  Q
    |||| |||||||| ||||||| ||||| ||| ||||||| |||| |||||||| ||| ||||||| | || | | ||| |||| |||||||||||    
T  20279602 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccccgggggcacttgttaacaagaccctta 20279696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 21066229 - 21066323
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccctta 284  Q
    |||| |||||||| ||||||| ||||| ||| ||||||| |||| |||||||| ||| ||||||| | || | | ||| |||| |||||||||||    
T  21066229 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccccgggggcacttgttaacaagaccctta 21066323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 43429748 - 43429682
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    |||| |||||||||| ||||| ||||||||  ||||||||||| ||| |||||| || |||||||||    
T  43429748 attgaaaattgaagtttttgacttttttaagaaataatttcttcattaagaatctttaaagagtgtc 43429682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 11727919 - 11727993
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaattt 237  Q
    |||| |||||||||||| |||  |||  |||| |||||||||||||||| ||||| ||| ||||||||||||||||    
T  11727919 ttttaatgaaaatttgtatatttaatgtattgaaaattgaagtatttgacttttt-aaagaataatttcttaattt 11727993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 12787935 - 12787844
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagt 253  Q
    |||||||||||||||||| ||  |||  |||||||||||||| |||  | ||||| ||  |||||||| |||||||||||| ||| ||||||    
T  12787935 tttttatgaaaatttgtgcatttaatgaattggaaattgaagcattatactttttcaataaataattttttaatttagaattcttaaagagt 12787844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 33285944 - 33286039
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtca 257  Q
    |||||||||||| ||||||||  ||||||| | |||||||| | ||  | ||||| ||| ||||||||||||||| | || |||| ||||||||||    
T  33285944 tttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatttcttaattgataaaccttaaagagtgtca 33286039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 41106044 - 41106100
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatcct 245  Q
    ||||| |||||||| ||||||| ||||||||  | |||||||||||||| |||||||    
T  41106044 cattgaaaattgaactatttgacttttttaatgattaatttcttaatttggaatcct 41106100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 44042597 - 44042530
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaat-aataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||||||||||||||| ||||| ||||| ||| |||| ||||||||||  |||||||| |||||||||    
T  44042597 cattggaaattgaagta-ttgaactttttcaatgaatagtttcttaattatgaatccttaaagagtgtc 44042530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 18684451 - 18684327
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatcctt--gaagagtgtca 257  Q
    |||||||||||||||||||||||  |||||||||||||||||| | | ||| ||||||||| ||||| ||| |||||||| || |||   |||||||||     
T  18684451 actttttatgaaaatttgtgtatttaatacattggaaattgaattgtatgacttttttaaagaataacttcctaatttagcatgctttaaaagagtgtcc 18684352  T
Q  258 cgagagtactcgttagcaagaccct 282  Q
    |||||| |||||||| |||||||||    
T  18684351 cgagagcactcgttaacaagaccct 18684327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 9153494 - 9153577
Alignment:
Q  165 ttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatcctt 246  Q
    |||||| |||||||||||||  ||| |||||||||||||||| ||||  ||||||||| |||||||||||||||| ||||||||    
T  9153494 ttttataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatcctt 9153577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 13538485 - 13538391
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||||| || |||||  ||| |||||||||||||| ||||||||||||||||| ||||||||  |||||||| || ||| |||||||    
T  13538485 actttttatgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgcttaaagagtg 13538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 8964477 - 8964399
Alignment:
Q  166 tttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    ||||||||||||||||||   ||| |||||||||||||| ||||| | ||||||||| ||||||| |||||||||||||    
T  8964477 tttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaat 8964399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 8773734 - 8773812
Alignment:
Q  204 tatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccct 282  Q
    ||||||| ||||||| | |||||||||||  ||||||||| || ||||||| | ||||||||||||||| |||||||||    
T  8773734 tatttgacttttttataaaataatttcttcttttagaatctttaaagagtgccccgagagtactcgttaacaagaccct 8773812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 32859872 - 32859795
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttag 239  Q
    |||||||||||| ||||||||  |||||||||||||||||| | ||||| ||||||||| ||||| ||| ||||||||    
T  32859872 tttttatgaaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttag 32859795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 41544038 - 41543945
Alignment:
Q  189 cattggaaattgaagtatttgaatttttt-aaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccc 281  Q
    |||||||||||||| |||||||||||||| ||| ||||||||| |||||||  || ||| |||| || | || |||||||||||| ||||||||    
T  41544038 cattggaaattgaactatttgaatttttttaaagaataatttcctaatttaatatgcttaaagaatgcctcgggagtactcgttaacaagaccc 41543945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 13197337 - 13197219
Alignment:
Q  164 tttttatgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgag 261  Q
    ||||||| ||||||| ||||  |||| ||||  |||||||| ||||||| |||||   | |||||||||||| |||| |||| |||||||||||| ||||    
T  13197337 tttttataaaaatttatgtaattaatgcattaaaaattgaaatatttgactttttatga-aataatttcttattttaaaatcattgaagagtgtcccgag 13197239  T
Q  262 agtactcgttagcaagaccc 281  Q
    |  |||||||||||||||||    
T  13197238 aaaactcgttagcaagaccc 13197219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 8789893 - 8789823
Alignment:
Q  212 ttttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccct 282  Q
    ||||||| | |||||||||||  ||||||||| || ||||||||| ||| ||||||||||| |||||||||    
T  8789893 ttttttataaaataatttcttcttttagaatctttaaagagtgtcccgaaagtactcgttaacaagaccct 8789823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 27921927 - 27921858
Alignment:
Q  212 ttttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccc 281  Q
    ||||||||  ||||||||||||||||||||| ||| |||||||||  |||  |||| |||||||||||||    
T  27921927 ttttttaataaataatttcttaatttagaatacttaaagagtgtcctgagtatacttgttagcaagaccc 27921858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 33840011 - 33839956
Alignment:
Q  184 taatacattggaaattgaagtatttgaatt-ttttaaataataatttcttaattta 238  Q
    ||||| |||| |||||||||||||||| || ||||| |||||||||||||||||||    
T  33840011 taatatattgaaaattgaagtatttgatttcttttacataataatttcttaattta 33839956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 44195596 - 44195502
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||| ||||  |||||||  ||| ||||| |||||||| ||||| | |||| |||| ||||||||||||||||| ||| ||| |||||||    
T  44195596 actttttataaaaacatgtgtatttaatgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgcttaaagagtg 44195502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 44330675 - 44330718
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttctt 232  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||    
T  44330675 cattggaaattggagtttttgacttttttaaataataatttctt 44330718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 44365449 - 44365492
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttctt 232  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||    
T  44365449 cattggaaattggagtttttgacttttttaaataataatttctt 44365492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 2826002 - 2826100
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagacccttaact 287  Q
    |||||||||| ||| ||||| | ||||||||| |||||||||||| ||||| || ||| ||||||  |||  |   |||||||| ||||||||||||||    
T  2826002 cattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagtaccacagggacactcgttaacaagacccttaact 2826100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 14663227 - 14663293
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||||||||||| ||||||| || |||||| |||||||| |||||||| ||| ||| || ||||||    
T  14663227 attggaaattgaactatttgacttatttaaagaataattttttaatttaaaatgcttaaaaagtgtc 14663293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 27501776 - 27501846
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||| |||||||||||||||| ||||| ||||| ||| ||||||||||| ||| | ||| ||| |||||||    
T  27501776 taatgcattggaaattgaagtttttgactttttaaaaaaataatttctttattaaaaattcttaaagagtg 27501846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 33275915 - 33276005
Alignment:
Q  166 tttatgaaaatttgtgtata-atacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgt 255  Q
    ||||||||||| |||||||  ||  |||| |||||||| ||||| | ||||||||| |||||||||||  |||||||| ||| ||||||||    
T  33275915 tttatgaaaatgtgtgtatctatgtattgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgt 33276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 40347966 - 40348030
Alignment:
Q  164 tttttatgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataa 226  Q
    ||||||||||||||||||||  |||||||||  |||||||| | ||||| ||||||||| |||||    
T  40347966 tttttatgaaaatttgtgtatttaatacattaaaaattgaactgtttgacttttttaaagaataa 40348030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 18375122 - 18375058
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagt 253  Q
    ||||| |||||| ||| ||||| ||||||||| ||||||||||| |||  |||||||| ||||||    
T  18375122 cattgaaaattggagtttttgacttttttaaagaataatttctttattaggaatccttaaagagt 18375058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 20064997 - 20064906
Alignment:
Q  165 ttttatgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||||| |||||||  |||||||||| |||||| | || |||| ||||| ||| ||||||| ||  |||||| |||||| |||||||    
T  20064997 ttttatgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataattactatatttaggatccttaaagagtg 20064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 25437891 - 25438014
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaatttttt-aaataataatttcttaatttagaatccttgaagagtgtcac 258  Q
    |||||||||||||| ||||||||  |||||||||||||||||| | ||| | |||||| ||| ||||| |||||||||||| || ||| ||||||||| |    
T  25437891 actttttatgaaaacttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatttagcatgcttaaagagtgtccc 25437990  T
Q  259 gagagtactcgttagcaagaccct 282  Q
    | | | |||||||| |||||||||    
T  25437991 gggggcactcgttaacaagaccct 25438014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 26663699 - 26663642
Alignment:
Q  185 aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    |||||||||||||| ||| ||||||| ||||||||| |||||||||||| ||||||||    
T  26663699 aatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 26935294 - 26935237
Alignment:
Q  185 aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    |||||||||||||| ||| ||||||| ||||||||| |||||||||||| ||||||||    
T  26935294 aatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 591270 - 591366
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagacccttaa 285  Q
    |||||||||||||||| || || ||||||||| ||||||||||| |||   ||||||| |||||||||   || | |||||||| ||||||||||||    
T  591270 cattggaaattgaagttttcgacttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagacccttaa 591366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 967191 - 967114
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaattt 237  Q
    |||||| |||||||||  |||||  ||| |||||||||||||| ||||||||||||||||| |||||| || ||||||    
T  967191 acttttcatgaaaattcatgtattcaatgcattggaaattgaactatttgaattttttaaagaataatatcctaattt 967114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 24041040 - 24041117
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaattt 237  Q
    |||||||||||||| || |||||  |||  |||||||||| || ||||||||||||||||| ||||||||| ||||||    
T  24041040 actttttatgaaaagttatgtatttaatgtattggaaattaaactatttgaattttttaaagaataatttcataattt 24041117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 8761991 - 8761922
Alignment:
Q  185 aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||| |||||||| ||||| | ||||||| | |||||||||||  |||||||||||| |||||||    
T  8761991 aatacattgaaaattgaaatatttaacttttttatagaataatttctttttttagaatccttaaagagtg 8761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 8247123 - 8247035
Alignment:
Q  193 ggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccc 281  Q
    |||||| ||| ||||||| ||||||| | ||| |||||||  ||| |||||||| |||||||||||| | | |||||||| ||||||||    
T  8247123 ggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatccttaaagagtgtcacgggggcactcgttaacaagaccc 8247035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 14042523 - 14042459
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagt 253  Q
    ||||||||||  || ||||||| |||||||||||||||||| ||| ||||||||| || ||||||    
T  14042523 cattggaaatcaaaatatttgacttttttaaataataatttattattttagaatctttaaagagt 14042459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 34032141 - 34032232
Alignment:
Q  194 gaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagacccttaa 285  Q
    ||||||||| ||||| | ||||||||| ||||||| |||| |||||||| ||| ||||||| | | ||   |||||||| ||||||||||||    
T  34032141 gaaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaagagtgccccaaggacactcgttaacaagacccttaa 34032232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 28307216 - 28307159
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    ||||| |||||||||| |||||||||| ||| ||||| |||||||| ||||||||||||    
T  28307216 taatatattggaaattaaagtatttga-tttattaaaaaataattttttaatttagaat 28307159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 41583630 - 41583509
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgag 261  Q
    ||||||||||||| |||||||  ||| |||||||| ||| | ||||| | ||||| ||  |||||||||| ||||| | |||||| ||||||| | || |    
T  41583630 tttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaatttgggatccttaaagagtgacccggg 41583531  T
Q  262 agtactcgttagcaagaccctt 283  Q
     | |||||||| ||||||||||    
T  41583530 ggcactcgttaacaagaccctt 41583509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 14309106 - 14309182
Alignment:
Q  164 tttttatgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataatttcttaattta 238  Q
    ||||||||||||||||||||  |||| ||||||||||||||   |||||  |||||||| ||||| | |||||||||    
T  14309106 tttttatgaaaatttgtgtaattaatgcattggaaattgaaaactttgatatttttaaagaataactacttaattta 14309182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 11010331 - 11010248
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatcct 245  Q
    |||||||| ||| ||||||||  ||| |||  |||||||||||||| || ||||| ||  |||| |||||||||||||||||||    
T  11010331 tttttatggaaagttgtgtattcaatgcatcagaaattgaagtattagactttttcaatgaatagtttcttaatttagaatcct 11010248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 31759037 - 31759081
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatt 228  Q
    |||||||||| |||||||||||||||| ||||||||  |||||||    
T  31759037 taatacattgaaaattgaagtatttgatttttttaataaataatt 31759081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 33590113 - 33590061
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    ||||||||||||| ||||| | ||||| ||| |||||||| ||||||||||||    
T  33590113 attggaaattgaactatttaattttttaaaagaataatttattaatttagaat 33590061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 33639759 - 33639834
Alignment:
Q  164 tttttatgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataatttcttaattt 237  Q
    |||||||||||||||| |||  |||||||||| ||||| || ||||||| | |||||||  ||||||| |||||||    
T  33639759 tttttatgaaaatttgcgtatttaatacattgtaaattaaaatatttgattattttaaaatataatttattaattt 33639834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 35195199 - 35195243
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaa 234  Q
    |||||||||||||||| ||||  ||||||||| ||||||||||||    
T  35195199 attggaaattgaagtagttgacatttttaaattataatttcttaa 35195243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 34681781 - 34681690
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaaga 251  Q
    ||||||||| |||| ||||||||  ||| |||||||||||||| ||||||| |||| |||| ||||||||| ||||||||||| ||| ||||    
T  34681781 actttttataaaaacttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaatgcttaaaga 34681690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 6388000 - 6388066
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||| |||  |||||||| |||||||||    
T  6388000 attggaaattgaagtttttgacttttttaaagaataatttctttattatgaatccttaaagagtgtc 6388066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 36061523 - 36061638
Alignment:
Q  166 tttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagag 263  Q
    |||| ||||||||||||||  ||| |||||||||| | ||||||||| ||||||||  |||||||||||  |||||||||||| || |||||  || | |    
T  36061523 tttaggaaaatttgtgtattcaatgcattggaaatagtagtatttgacttttttaataaataatttcttgctttagaatcctt-aaaagtgtttcggggg 36061621  T
Q  264 tactcgttagcaagacc 280  Q
     ||||||||||||||||    
T  36061622 cactcgttagcaagacc 36061638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 35599819 - 35599898
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttag 239  Q
    |||||||||||||| || |||||  ||| ||||| || ||||| ||||||||||||||||| ||||||||| ||||||||    
T  35599819 actttttatgaaaagttatgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttag 35599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 27338341 - 27338257
Alignment:
Q  172 aaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||||  |||| ||||||||||||| | ||||| ||||||||| ||||||||  |||||||| || ||| |||||||    
T  27338341 aaaatttgtgtatttaatatattggaaattgaactgtttgatttttttaaagaataattttctaatttagcatgcttaaagagtg 27338257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 8170076 - 8169996
Alignment:
Q  204 tatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccctta 284  Q
    ||||||| ||||||| | |||||||||||  ||| |||||||| ||||||||  || ||||||| |||| |||||||||||    
T  8170076 tatttgacttttttataaaataatttcttcttttggaatccttaaagagtgttccgggagtacttgttaacaagaccctta 8169996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 44452060 - 44452155
Alignment:
Q  164 tttttatgaaaatttgtgta-taa--tacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||||||||| |||||||| |||  | ||||||||||||||   |||||  |||||||||||||||| |||||||||||||  || |||||||||    
T  44452060 tttttatgaaagtttgtgtaataaagtgcattggaaattgaaacttttgatatttttaaataataattacttaatttagaatgtttaaagagtgtc 44452155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 17883361 - 17883424
Alignment:
Q  191 ttggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||| ||| | ||||||| |||||||    
T  17883361 ttggaaattaaagtttttgacttttttaaaaaataatttctttattaaaaatccttaaagagtg 17883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 18926416 - 18926322
Alignment:
Q  162 actttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||||| ||||||||  ||| ||||| |||||||| ||||| |  |||||||| ||||||||| | ||||| ||| ||| |||||||    
T  18926416 actttttatgaaaagttgtgtattcaatgcattgaaaattgaactatttcacctttttaaagaataatttcatgatttaaaatgcttaaagagtg 18926322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 34398095 - 34398188
Alignment:
Q  165 ttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    |||||| ||||||||||| |  ||| ||||| ||||||||||||||||  |||||||| |||||| |||| ||||| |||  || |||||||||    
T  34398095 ttttataaaaatttgtgttttcaatgcattgaaaattgaagtatttgacctttttaaaaaataatatcttgatttaaaatttttaaagagtgtc 34398188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 36973424 - 36973331
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttga-attttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||||||||||| |||  | | |||||||||||||| |||||||  ||||||||| ||||| ||| |||||| |||| ||| |||||||    
T  36973424 tttttatgaaaatttgtatatttattgcattggaaattgaattatttgattttttttaaagaataacttcctaatttggaatgcttaaagagtg 36973331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 18219146 - 18219222
Alignment:
Q  204 tatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccc 281  Q
    ||||||| ||||||||| |||||||||| |||||| ||| ||| || |||||  || || ||||||||||||||||||    
T  18219146 tatttgagttttttaaagaataatttctaaatttaaaattcttaaatagtgtttcg-gaatactcgttagcaagaccc 18219222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 33922786 - 33922839
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaat 242  Q
    ||||| |||||||| ||||||| ||||||||| ||||||||  |||||||||||    
T  33922786 cattgaaaattgaactatttgacttttttaaagaataattttctaatttagaat 33922839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 37352436 - 37352524
Alignment:
Q  170 tgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    ||||||||||||||  |||| |||||||||||||| ||||||| ||||| |   |||||||||||  ||| |||||||| |||| ||||    
T  37352436 tgaaaatttgtgtaattaatgcattggaaattgaaatatttgactttttaatggaataatttcttgtttttgaatccttaaagaatgtc 37352524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 41431132 - 41431201
Alignment:
Q  185 aatacattggaaattgaagtatttgaattttttaaataa-taatttcttaatttagaatccttgaagagt 253  Q
    |||||||| ||||||||| ||||| | ||||||||| || ||||||||||||||| ||| ||| ||||||    
T  41431132 aatacattagaaattgaaatatttaatttttttaaaaaaataatttcttaatttaaaatgcttaaagagt 41431201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 47507674 - 47507605
Alignment:
Q  185 aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||| |||||||||| | ||||| ||||||| | ||| |||||||  |||||||||||| |||||||    
T  47507674 aatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatccttaaagagtg 47507605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 26402829 - 26402893
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||| |||||||||| ||||| ||||||||  ||||||||||| |||  |||||||| |||||||    
T  26402829 attgaaaattgaagtttttgacttttttaaggaataatttctttattaggaatccttaaagagtg 26402893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 26804065 - 26804105
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataattt 229  Q
    |||||||||||||||| ||||| ||||||||| ||||||||    
T  26804065 cattggaaattgaagtttttgacttttttaaagaataattt 26804105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 39912262 - 39912350
Alignment:
Q  195 aaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccctt 283  Q
    |||||||| | ||||| ||||||||||||||| ||| |||||||| || ||| ||||||||| || | | |||||||| ||||||||||    
T  39912262 aaattgaattgtttgacttttttaaataataacttcctaatttagcatgcttaaagagtgtcccgggggcactcgttaacaagaccctt 39912350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 5250920 - 5250997
Alignment:
Q  164 tttttatgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttag 239  Q
    ||||||||||||||||||||  |||||||||| ||||| || | ||||| ||||||||| ||||| ||| ||||||||    
T  5250920 tttttatgaaaatttgtgtatttaatacattgaaaattaaactgtttgacttttttaaagaataacttcctaatttag 5250997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 24607416 - 24607477
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaaga 251  Q
    ||||||||||| ||||||||||| |||||||| |||||||| |||||| ||||||||| ||||    
T  24607416 cattggaaattcaagtatttgaa-tttttaaaaaataatttattaattaagaatccttaaaga 24607477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 6983013 - 6983101
Alignment:
Q  168 tatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||||| |||||  ||| ||||| |||||||| ||||||| | ||||||  |||||||||||||||| |||| ||| |||||||    
T  6983013 tatgaaaatttatgtatccaatgcattgaaaattgaaatatttgactcttttaatgaataatttcttaatttggaatacttaaagagtg 6983101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 34861259 - 34861323
Alignment:
Q  190 attggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||||||||||| | |||||  |||||||| ||||||| ||||||||||||| ||| |||||||    
T  34861259 attggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtg 34861323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 44584069 - 44584164
Alignment:
Q  164 tttttatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtca 257  Q
    |||||||||||| ||||| ||  ||||||||| ||||||||  ||| || ||||| ||  |||| |||||||||||||| ||||| ||||||||||    
T  44584069 tttttatgaaaacttgtgcatttaatacattgaaaattgaaacattagactttttcaacaaatagtttcttaatttagattccttaaagagtgtca 44584164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 6285900 - 6285849
Alignment:
Q  195 aaattgaagtatttgaattttttaaataataatttcttaatttagaatcctt 246  Q
    |||||| ||||||||| ||||||||| |||||||||||| |||| |||||||    
T  6285900 aaattgtagtatttgacttttttaaagaataatttcttattttaaaatcctt 6285849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 43492174 - 43492269
Alignment:
Q  189 cattggaaattgaagtatttgaatttttt-aaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaagaccctt 283  Q
    |||||||||||||||| ||||| |||||| ||| ||||||||||| |||  |||||||| ||||||| |   || | |||||||| ||||||||||    
T  43492174 cattggaaattgaagtttttgactttttttaaaaaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaagaccctt 43492269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 25095663 - 25095601
Alignment:
Q  195 aaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtca 257  Q
    |||||||| ||||||| |||||||   |||||||||||  |||||||||||| ||||||||||    
T  25095663 aaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaagagtgtca 25095601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 5115625 - 5115717
Alignment:
Q  164 tttttatgaaaatttgtgta--taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    ||||| || |||||||||||  |||| |||||||||||||| ||||| | ||||||| |  ||||||| ||  |||||||||||| |||||||    
T  5115625 tttttttgtaaatttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaagagtg 5115717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 35259116 - 35259181
Alignment:
Q  213 tttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaaga 278  Q
    |||||||| |||||||||||||||||| || ||| ||||||| | |||| | |||||||| |||||    
T  35259116 tttttaaaaaataatttcttaatttagcatacttaaagagtgccccgagggcactcgttaacaaga 35259181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 35508450 - 35508361
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtcacgagagtactcgttagcaaga 278  Q
    |||||||||||||||| ||  | ||||| ||| ||||||||||||||| |||| || | ||||||||||  || | |||||||| |||||    
T  35508450 cattggaaattgaagtgttaaattttttcaaagaataatttcttaattgagaaaccataaagagtgtcatcagggcactcgttaacaaga 35508361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 12132610 - 12132522
Alignment:
Q  168 tatgaaaatttgtgtat--aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||||||||  ||| ||||| |||||||| |||||||  |||||||| |||| |||| |||| |||||| ||| |||||||    
T  12132610 tatgaaaatttgtgtattaaatgcattgaaaattgaattatttgacgtttttaaagaatattttcataatatagaatgcttcaagagtg 12132522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 22020567 - 22020610
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttctt 232  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||    
T  22020567 cattggaaattggagtttttgacttttttaaataataatttctt 22020610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 22055064 - 22055107
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttctt 232  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||    
T  22055064 cattggaaattggagtttttgacttttttaaataataatttctt 22055107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 24797477 - 24797408
Alignment:
Q  185 aatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||||||||||||||  ||| ||||| ||||||||| ||||||||||| |||  ||||| || |||||||    
T  24797477 aatacattggaaattagagtttttgacttttttaaagaataatttctttattaggaatcattaaagagtg 24797408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 29408063 - 29407998
Alignment:
Q  189 cattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtg 254  Q
    |||| ||||||| ||| ||||| ||||||||| ||||||||||| |||  |||||||| |||||||    
T  29408063 cattagaaattggagtttttgacttttttaaagaataatttctttattaggaatccttaaagagtg 29407998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 2814 - 2762
Alignment:
Q  195 aaattgaagtatttgaatttt-ttaaataataatttcttaatttagaatcctt 246  Q
    |||||||||||||||| |||| ||||| |||||||| ||||||||||||||||    
T  2814 aaattgaagtatttgatttttcttaaacaataatttattaatttagaatcctt 2762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 219255 - 219183
Alignment:
Q  184 taatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttgaagagtgtc 256  Q
    |||| |||||||||||||| ||||||| |||| |||| ||||||||| ||||||| ||| ||| |||| ||||    
T  219255 taatgcattggaaattgaactatttgacttttgtaaagaataatttcctaatttaaaatgcttaaagaatgtc 219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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