View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17600_low_9 (Length: 250)
Name: NF17600_low_9
Description: NF17600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17600_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 40403210 - 40403451
Alignment:
| Q |
1 |
accaacttgtttggcctattttttacaaagtggaaccaacaaacataagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatt |
100 |
Q |
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| T |
40403210 |
accaacttgtttggcctattttttacaaaatggaaccaacaaccataagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatt |
40403309 |
T |
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| Q |
101 |
tggaaaggactctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaacttaaaaggactgcacttgaaatatgggtacatggtataatta |
200 |
Q |
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| T |
40403310 |
tggaaaggactctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaacttaaaaggacggcacttgaaatatgggtacatagtataatta |
40403409 |
T |
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| Q |
201 |
caattatatttttggctaatttgtgtgactcacacctatgct |
242 |
Q |
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| T |
40403410 |
caattatatttttggctaatttgtgtgactcacacctatgct |
40403451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 39619444 - 39619548
Alignment:
| Q |
46 |
taagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatttggaaaggactctgagaagctgaaagcatggagatcagctttgtt |
145 |
Q |
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| T |
39619444 |
taagacatcagaaaaatagttacgagaaagccatggttgatcatgaggttaagtttggaaaagactctgaaaatgtaaaagcatggataacagcattgtc |
39619543 |
T |
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| Q |
146 |
tgaag |
150 |
Q |
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| T |
39619544 |
tgaag |
39619548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 40256826 - 40256675
Alignment:
| Q |
9 |
gtttggcctattttttacaaagtggaaccaacaaacataagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatttggaaagg |
108 |
Q |
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| T |
40256826 |
gtttggccaattttttacaaagtggagccatcagatgtaaggtatcagaagaatagttatggtaaagcaatgactgaacatgaaaataattttggaaatg |
40256727 |
T |
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| Q |
109 |
actctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaactt |
160 |
Q |
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| T |
40256726 |
attatgagaagatacaaaaatggagatcagctttgtttcaagttgccaactt |
40256675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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